ENSG00000134250


Homo sapiens

Features
Gene ID: ENSG00000134250
  
Biological name :NOTCH2
  
Synonyms : NOTCH2 / Q04721
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p12
Gene start: 119911553
Gene end: 120069626
  
Corresponding Affymetrix probe sets: 202443_x_at (Human Genome U133 Plus 2.0 Array)   202445_s_at (Human Genome U133 Plus 2.0 Array)   210756_s_at (Human Genome U133 Plus 2.0 Array)   212377_s_at (Human Genome U133 Plus 2.0 Array)   227067_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000477065
Ensembl peptide - ENSP00000492223
Ensembl peptide - ENSP00000256646
Ensembl peptide - ENSP00000473427
NCBI entrez gene - 4853     See in Manteia.
OMIM - 600275
RefSeq - XM_017001373
RefSeq - NM_001200001
RefSeq - NM_024408
RefSeq - XM_005270901
RefSeq - XM_011541519
RefSeq - XM_011541520
RefSeq - XM_017001372
RefSeq Peptide - NP_001186930
RefSeq Peptide - NP_077719
swissprot - D2WEZ3
swissprot - R4GN02
swissprot - A0A1W2PQQ5
swissprot - Q04721
Ensembl - ENSG00000134250
  
Related genetic diseases (OMIM): 102500 - Hajdu-Cheney syndrome, 102500
  610205 - Alagille syndrome 2, 610205
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 notch2ENSDARG00000043130Danio rerio
 si:ch73-281k2.5ENSDARG00000104329Danio rerio
 NOTCH2ENSGALG00000002922Gallus gallus
 Notch2ENSMUSG00000027878Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NOTCH1 / P46531ENSG0000014840055
NOTCH3 / Q9UM47ENSG0000007418149
NOTCH4 / Q99466ENSG0000020430133
JAG1 / P78504 / jagged 1ENSG0000010138415
SNED1 / Q8TER0 / sushi, nidogen and EGF like domains 1ENSG0000016280415
JAG2 / Q9Y219 / jagged 2ENSG0000018491615
DLL1 / O00548 / delta like canonical Notch ligand 1ENSG000001987199
DLL4 / Q9NR61 / delta like canonical Notch ligand 4ENSG000001289178


Protein motifs (from Interpro)
Interpro ID Name
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000742  EGF-like domain
 IPR000800  Notch domain
 IPR001881  EGF-like calcium-binding domain
 IPR002110  Ankyrin repeat
 IPR008297  Notch
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR010660  Notch, NOD domain
 IPR011656  Notch, NODP domain
 IPR013032  EGF-like, conserved site
 IPR018097  EGF-like calcium-binding, conserved site
 IPR020683  Ankyrin repeat-containing domain
 IPR022336  Neurogenic locus Notch 2
 IPR024600  Domain of unknown function DUF3454, notch
 IPR035993  Notch-like domain superfamily
 IPR036770  Ankyrin repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001709 cell fate determination TAS
 biological_processGO:0002315 marginal zone B cell differentiation ISS
 biological_processGO:0003184 pulmonary valve morphogenesis IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated TAS
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter TAS
 biological_processGO:0006915 apoptotic process TAS
 biological_processGO:0007050 cell cycle arrest IDA
 biological_processGO:0007219 Notch signaling pathway TAS
 biological_processGO:0007275 multicellular organism development NAS
 biological_processGO:0007399 nervous system development NAS
 biological_processGO:0009887 animal organ morphogenesis IEP
 biological_processGO:0010629 negative regulation of gene expression IDA
 biological_processGO:0019827 stem cell population maintenance TAS
 biological_processGO:0030097 hemopoiesis TAS
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030522 intracellular receptor signaling pathway IEA
 biological_processGO:0043066 negative regulation of apoptotic process TAS
 biological_processGO:0045967 negative regulation of growth rate IDA
 biological_processGO:0046579 positive regulation of Ras protein signal transduction IDA
 biological_processGO:0046849 bone remodeling IMP
 biological_processGO:0050793 regulation of developmental process IEA
 biological_processGO:0060413 atrial septum morphogenesis IMP
 biological_processGO:0061314 Notch signaling involved in heart development IC
 biological_processGO:0070374 positive regulation of ERK1 and ERK2 cascade IDA
 biological_processGO:2001204 regulation of osteoclast development IMP
 cellular_componentGO:0000139 Golgi membrane TAS
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane IDA
 cellular_componentGO:0009986 cell surface IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0043235 receptor complex IDA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Pre-NOTCH Processing in the Endoplasmic Reticulum
Pre-NOTCH Transcription and Translation
Pre-NOTCH Processing in Golgi
NOTCH2 intracellular domain regulates transcription
NOTCH2 Activation and Transmission of Signal to the Nucleus
Notch-HLH transcription pathway
Defective LFNG causes SCDO3
NOTCH4 Intracellular Domain Regulates Transcription


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000023 Inguinal hernia 
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000089 Renal hypoplasia 
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 HP:0000093 Proteinuria 
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 HP:0000107 Renal cysts 
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000233 Thin vermillion border 
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 HP:0000238 Hydrocephalus 
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000268 Dolichocephaly 
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 HP:0000269 Prominent occiput 
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 HP:0000280 Coarse facial features 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000293 Full cheeks 
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 HP:0000294 Low frontal hairline "A condition in which the scalp hair is present at lower than usual areas of the forehead." [HPO:curators]
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 HP:0000307 Pointed chin 
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 HP:0000316 Hypertelorism 
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 HP:0000325 Triangular facies 
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 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
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 HP:0000343 Long philtrum 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000445 Broad nose 
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000470 Short neck 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000506 Telecanthus "An abnormally increased distance between the medial canthi (angle between eyelids) of the eyelids." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000527 Long eyelashes "Mid upper eyelash length >10 mm or increased length of the eyelashes (subjective)." [pmid:19125427]
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 HP:0000545 Myopia 
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 HP:0000574 Thick eyebrows 
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 HP:0000612 Iris coloboma "A `coloboma` (HP:0000589) of the `iris` (FMA:58235)." [HPO:probinson]
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 HP:0000627 Posterior embryotoxon 
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 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000689 Dental malocclusion "Dental malocclusion refers to an abnormality of the occlusion, or alignment, of the teeth and the way the upper and lower teeth fit together, resulting in overcrowding of teeth or in abnormal bite patterns." [HPO:curators]
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 HP:0000704 Periodontal disease 
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 HP:0000768 Pectus carinatum "A deformity of the chest caused by overgrowth of the ribs and characterized by protrusion of the sternum." [HPO:curators]
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 HP:0000790 Hematuria "The presence of blood in the urine. Hematuria may be gross hematuria (visible to the naked eye) or microscopic hematuria (detected by dipstick or microscopic examination of the urine)." [HPO:curators]
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000823 Delayed puberty 
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0000958 Dry skin 
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 HP:0001007 Hirsutism "Abnormally increased hair growth." [HPO:curators]
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 HP:0001072 Thickened skin 
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 HP:0001156 Brachydactyly 
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 HP:0001231 Abnormality of the fingernails "An abnormality of the `fingernails` (FMA:54327)." [HPO:probinson]
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 HP:0001388 Joint laxity 
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 HP:0001508 Failure to thrive 
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0001608 Abnormality of the voice "Any abnormality of the voice." [HPO:curators]
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001636 Tetralogy of Fallot "A congenital cardiac malformation comprising pulmonary stenosis, overriding aorta, ventricular septum defect, and right ventricular hypertrophy. The diagnosis of TOF is made if at least three of the four above mentioned features are present." [HPO:curators]
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 HP:0001642 Pulmonic stenosis "A narrowing of the right ventricular outflow tract that can occur at the pulmonary valve (valvular stenosis) or just below the pulmonary valve (infundibular stenosis). Infundibular pulmonic stenosis is mostly caused by overgrowth of the heart muscle wall (hypertrophy of the septoparietal trabeculae). Pulmonic stenosis is often seen as a part of Fallot s tetralogy, in which case the events leading to the formation of the overriding aorta are also believed to be a cause of the pulmonic stenosis. The pulmonic stenosis is the major cause of the malformations seen in patients with Fallot tetralogy, with the other associated malformations acting as compensatory mechanisms to the pulmonic stenosis. The degree of stenosis varies between individuals with TOF, and is the primary determinant of symptoms and severity. This malformation is infrequently described as sub-pulmonary stenosis or subpulmonary obstruction." [HPO:curators]
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001650 Aortic stenosis "The presence of a stenosis (narrowing) of the aortic valve." [HPO:curators]
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 HP:0001671 Abnormality of the cardiac septa 
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 HP:0001718 Mitral stenosis 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001799 Short nails 
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 HP:0001831 Brachydactyly (feet) 
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 HP:0001842 Acroosteolysis (feet) 
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 HP:0001947 Renal tubular acidosis 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002208 Coarse hair 
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 HP:0002230 Generalized hirsutism "Abnormally increased hair growth over much of the entire body." [HPO:curators]
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002308 Arnold-Chiari malformation "Arnold-Chiari malformation consists of a downward displacement of the cerebellar tonsils and the medulla through the foramen magnum, sometimes causing hydrocephalus as a result of obstruction of CSF outflow." [HPO:curators]
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 HP:0002315 Headache "Cephalgia, or pain in the head originating from the cerebral vault." [HPO:curators]
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 HP:0002566 Intestinal malrotation "An abnormality of the intestinal rotation and fixation that normally occurs during the development of the gut. This can lead to volvulus, or twisting of the intestine that causes obstruction and necrosis." [HPO:curators]
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 HP:0002611 Cholestatic liver disease 
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 HP:0002645 Wormian bones 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002652 Skeletal dysplasia 
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 HP:0002653 Bone pain 
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 HP:0002688 Absent frontal sinuses 
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 HP:0002691 Platybasia 
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 HP:0002714 Downturned corners of mouth "A morphological `abnormality of the mouth` (HP:0000153) in which the `angle of the mouth` (FMA:77269) is downturned." [HPO:probinson]
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 HP:0002751 Kyphoscoliosis 
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 HP:0002756 Pathologic fracture "A pathologic fracture occurs when a bone breaks in an area that is weakened secondary to another disease process such as tumor, infection, and certain inherited bone disorders. A pathologic fracture can occur without a degree of trauma required to cause fracture in healthy bone." [HPO:curators]
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 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
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 HP:0002797 Osteolysis 
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 HP:0002808 Kyphosis 
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 HP:0002829 Arthralgia 
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 HP:0002857 Genu valgum 
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 HP:0002953 Vertebral compression fractures 
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 HP:0002999 Dislocation of patella "The kneecap normally is located within the groove termed trochlea on the distal femur and can slide up and down in it. Patellar dislocation occurs if the patella fully dislocates out of the groove." [HPO:curators]
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 HP:0003083 Dislocated radial head "A dislocation of the head of the radius from its socket in the elbow joint." [HPO:curators]
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 HP:0003189 Long nose 
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 HP:0003396 Syringomyelia 
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 HP:0003812 Phenotypic variability 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004331 Decreased skull ossification "A reduction in the magnitude or amount of ossification of the skull." [HPO:curators]
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 HP:0004586 Biconcave vertebral bodies 
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 HP:0004969 peripheral pulmonary artery stenosis 
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 HP:0005463 Elongated sella turcica 
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 HP:0005562 Multiple renal cysts 
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 HP:0005692 Joint hyperflexibility 
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 HP:0005758 Foramen magnum lesion 
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 HP:0006180 Crowded carpal bones 
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 HP:0006480 Premature loss of teeth 
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 HP:0006487 Bowing of the long bones 
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 HP:0008421 Tall lumbar vertebral bodies 
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 HP:0008424 Hypoplastic 5th lumbar vertebrae 
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 HP:0008462 Cervical instability 
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 HP:0009748 Fleshy earlobes "Abnormally thickened or fleshy earlobes." [HPO:curators]
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 HP:0009771 Osteolytic defects of the phalanges of the hand "Dissolution or degeneration of bone tissue of the phalanges of the hand." [HPO:curators]
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 HP:0009830 Peripheral neuropathy "Peripheral neuropathy is a general term for any disorder of the peripheral nervous system. The main clinical features used to classify peripheral neuropathy are distribution, type (mainly demyelinating versus mainly axonal), duration, and course." [HPO:curators]
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 HP:0009882 Hypoplasia of the distal phalanges of the hand 
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 HP:0010669 Hypoplasia of the zygomatic bone "Underdevelopment of the `zygomatic bone` (FMA:52747)." [HPO:probinson]
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 HP:0010807 Open bite "Visible space between the dental arches in occlusion." [pmid:19125428]
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 HP:0011305 Partial absence of toe "The absence of a phalangeal segment of a toe or hallux." [pmid:19125433]
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 HP:0100670 Rough bone trabeculation 
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 HP:0200042 skin ulcer "A discontinuity of the skin exhibiting complete loss of the epidermis and often portions of the dermis and even subcutaneous fat." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000128917 DLL4 / Q9NR61 / delta like canonical Notch ligand 4  / complex / reaction
 ENSG00000100393 EP300 / Q09472 / E1A binding protein p300  / complex / reaction
 ENSG00000161021 MAML1 / Q92585 / mastermind like transcriptional coactivator 1  / reaction / complex
 ENSG00000134250 NOTCH2 / Q04721  / complex
 ENSG00000110492 MDK / P21741 / midkine  / complex / reaction
 ENSG00000184384 MAML2 / Q8IZL2 / mastermind like transcriptional coactivator 2  / complex / reaction
 ENSG00000118260 CREB1 / P16220 / cAMP responsive element binding protein 1  / reaction / complex
 ENSG00000184916 JAG2 / Q9Y219 / jagged 2  / complex / reaction
 ENSG00000196782 MAML3 / Q96JK9 / mastermind like transcriptional coactivator 3  / reaction / complex
 ENSG00000101384 JAG1 / P78504 / jagged 1  / reaction / complex
 ENSG00000137845 ADAM10 / O14672 / ADAM metallopeptidase domain 10  / reaction
 ENSG00000168214 RBPJ / Q06330 / recombination signal binding protein for immunoglobulin kappa J region  / complex / reaction
 ENSG00000080815 PSEN1 / P49768 / presenilin 1  / reaction
 ENSG00000018236 CNTN1 / Q12860 / contactin 1  / reaction / complex
 ENSG00000198719 DLL1 / O00548 / delta like canonical Notch ligand 1  / complex / reaction
 ENSG00000143801 PSEN2 / P49810 / presenilin 2  / reaction
 ENSG00000101346 POFUT1 / Q9H488 / protein O-fucosyltransferase 1  / reaction






 

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