ENSG00000128917


Homo sapiens

Features
Gene ID: ENSG00000128917
  
Biological name :DLL4
  
Synonyms : delta like canonical Notch ligand 4 / DLL4 / Q9NR61
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: 1
Band: q15.1
Gene start: 40929340
Gene end: 40939072
  
Corresponding Affymetrix probe sets: 223525_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000249749
NCBI entrez gene - 54567     See in Manteia.
OMIM - 605185
RefSeq - NM_019074
RefSeq Peptide - NP_061947
swissprot - Q9NR61
Ensembl - ENSG00000128917
  
Related genetic diseases (OMIM): 616589 - Adams-Oliver syndrome 6, 616589
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 dll4ENSDARG00000070425Danio rerio
 DLL4ENSGALG00000008514Gallus gallus
 Dll4ENSMUSG00000027314Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
DLL1 / O00548 / delta like canonical Notch ligand 1ENSG0000019871951
JAG2 / Q9Y219 / jagged 2ENSG0000018491633
JAG1 / P78504 / jagged 1ENSG0000010138431
NOTCH2 / Q04721ENSG0000013425027
NOTCH1 / P46531ENSG0000014840027
NOTCH3 / Q9UM47ENSG0000007418127
NOTCH4 / Q99466ENSG0000020430124
SNED1 / Q8TER0 / sushi, nidogen and EGF like domains 1ENSG0000016280421


Protein motifs (from Interpro)
Interpro ID Name
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000742  EGF-like domain
 IPR001774  Delta/Serrate/lag-2 (DSL) protein
 IPR001881  EGF-like calcium-binding domain
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR011651  Notch ligand, N-terminal domain
 IPR013032  EGF-like, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001525 angiogenesis ISS
 biological_processGO:0001569 branching involved in blood vessel morphogenesis IEA
 biological_processGO:0001974 blood vessel remodeling IEA
 biological_processGO:0003208 cardiac ventricle morphogenesis IEA
 biological_processGO:0003209 cardiac atrium morphogenesis IEA
 biological_processGO:0003222 ventricular trabecula myocardium morphogenesis IEA
 biological_processGO:0003344 pericardium morphogenesis IEA
 biological_processGO:0007154 cell communication IEA
 biological_processGO:0007165 signal transduction TAS
 biological_processGO:0007219 Notch signaling pathway TAS
 biological_processGO:0007220 Notch receptor processing TAS
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0008015 blood circulation TAS
 biological_processGO:0008285 negative regulation of cell proliferation IMP
 biological_processGO:0010596 negative regulation of endothelial cell migration IMP
 biological_processGO:0010628 positive regulation of gene expression IDA
 biological_processGO:0010629 negative regulation of gene expression IDA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030217 T cell differentiation IEA
 biological_processGO:0035333 Notch receptor processing, ligand-dependent TAS
 biological_processGO:0035912 dorsal aorta morphogenesis IEA
 biological_processGO:0035924 cellular response to vascular endothelial growth factor stimulus IMP
 biological_processGO:0043537 negative regulation of blood vessel endothelial cell migration IEA
 biological_processGO:0044344 cellular response to fibroblast growth factor stimulus IDA
 biological_processGO:0045746 negative regulation of Notch signaling pathway IEA
 biological_processGO:0045747 positive regulation of Notch signaling pathway IEA
 biological_processGO:0050767 regulation of neurogenesis IEA
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0060579 ventral spinal cord interneuron fate commitment IMP
 biological_processGO:0061074 regulation of neural retina development IEA
 biological_processGO:0061314 Notch signaling involved in heart development IEA
 biological_processGO:0072554 blood vessel lumenization IEA
 biological_processGO:0090051 negative regulation of cell migration involved in sprouting angiogenesis IMP
 biological_processGO:1903588 negative regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis IDA
 biological_processGO:2000179 positive regulation of neural precursor cell proliferation IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005112 Notch binding TAS
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Activated NOTCH1 Transmits Signal to the Nucleus
Constitutive Signaling by NOTCH1 PEST Domain Mutants
Constitutive Signaling by NOTCH1 t(7;9)(NOTCH1:M1580_K2555) Translocation Mutant
Constitutive Signaling by NOTCH1 HD Domain Mutants
Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants
NOTCH2 Activation and Transmission of Signal to the Nucleus
NOTCH3 Activation and Transmission of Signal to the Nucleus
NOTCH4 Activation and Transmission of Signal to the Nucleus


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000089 Renal hypoplasia 
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 HP:0000238 Hydrocephalus 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000965 Cutis marmorata 
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 HP:0001057 Aplasia cutis congenita "A developmental defect resulting in the congenital absence of skin in multiple or solitary non-inflammatory, well-demarcated, oval or circular ulcers with a diameter of about 1 to 2 cm. Aplasia cutis congenita most commonly occurs on the scalp, but may present in the face, trunk, or limbs." [HPO:curators]
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 HP:0001156 Brachydactyly 
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 HP:0001159 Syndactyly "Webbing or fusion of the fingers or toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers or toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001163 Abnormality of the metacarpal bones 
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 HP:0001171 Ectrodactyly (hands) 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001269 Hemiparesis "Relatively mild weakness in the arm, leg, and in some cases the face on one side of the body." [HPO:curators]
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 HP:0001276 Hypertonia 
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 HP:0001362 Skull defect "A localized defect in the bone of the skull resulting from abnormal embryological development. The defect is covered by normal skin. In some cases, skull x-rays have shown underlying lytic bone lesions which have closed before the age of one year." [HPO:curators]
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 HP:0001394 Cirrhosis 
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 HP:0001395 Hepatic fibrosis 
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 HP:0001409 Portal hypertension 
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 HP:0001508 Failure to thrive 
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 HP:0001541 Ascites 
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 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
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 HP:0001622 Premature birth 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001636 Tetralogy of Fallot "A congenital cardiac malformation comprising pulmonary stenosis, overriding aorta, ventricular septum defect, and right ventricular hypertrophy. The diagnosis of TOF is made if at least three of the four above mentioned features are present." [HPO:curators]
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 HP:0001641 Abnormality of the pulmonary valve "An abnormality of the `pulmonary valve` (FMA:7246)." [HPO:probinson]
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 HP:0001660 Persistant truncus arteriosus "Persistent Truncus Arteriosus results from a failure of the truncus arteriosus to close." [HPO:curators]
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 HP:0001800 Hypoplastic toenails "Underdeveloped toenails." [HPO:curators]
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 HP:0001804 Hypoplastic fingernails "Underdeveloped fingernails." [HPO:curators]
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 HP:0001817 Absent fingernails 
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 HP:0001849 Oligodactyly (feet) "A developmental defect resulting in the presence of fewer than the normal number of toes." [HPO:curators]
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 HP:0001873 Thrombocytopenia 
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 HP:0001882 Leukopenia 
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 HP:0001883 Talipes 
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 HP:0002040 Esophageal varices 
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 HP:0002084 Encephalocele 
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 HP:0002092 Pulmonary hypertension 
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 HP:0002132 Porencephaly 
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 HP:0002239 Gastrointestinal hemorrhage 
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002612 Congenital hepatic fibrosis 
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 HP:0003010 Prolonged bleeding time 
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 HP:0004050 Absent hands 
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 HP:0004348 Abnormality of bone mineral density "This term applies to all changes in bone mineralisation and or ossification which (depending on severity) can be seen on x-rays as a change in density and or structure of the bone. Changes may affect all bones of the organism, just certain bones or only parts of bones and include decreased mineralisation as may be seen in osteoporosis or increased mineralisation and or ossification as in osteopetrosis, exostoses or any kind of atypic calicfications of different origin and distribution. The overall amount of mineralisation of the bone-organ can be measured as the amount of matter per cubic centimeter of bones, usually measured by densitometry of the lumbar spine or hip. The measurements are usually reported as g/cm3 or as a Z-score (the number of standard deviations above or below the mean for the patient s age and sex). Note that measurement with this method does not reflect local changes in other bones, and as such might not be correct with regard the hole bone-organ." [HPO:curators]
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 HP:0004471 Aplasia cutis congenita over the scalp vertex "A developmental defect resulting in the congenital absence of skin on the scalp vertex, often just lateral to the midline." [HPO:curators]
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 HP:0004935 Pulmonary artery atresia 
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 HP:0005180 Tricuspid insufficiency 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0006970 Periventricular leukomalacia 
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 HP:0007383 Congenital localized absence of skin 
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 HP:0007385 Aplasia cutis congenita of scalp "A developmental defect resulting in the congenital absence of skin on the scalp." [HPO:curators]
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 HP:0008070 Sparse hair 
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 HP:0009882 Hypoplasia of the distal phalanges of the hand 
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 HP:0010301 Spinal dysraphism "A heterogeneous group of congenital spinal anomalies that result from defective closure of the neural tube early in fetal life." [HPO:curators]
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 HP:0010624 Aplastic/hypoplastic toenails 
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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 HP:0010760 Aplasia of the toes 
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 HP:0100026 Arteriovenous malformations 
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 HP:0200042 skin ulcer "A discontinuity of the skin exhibiting complete loss of the epidermis and often portions of the dermis and even subcutaneous fat." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000074181 NOTCH3 / Q9UM47  / complex / reaction
 ENSG00000204301 NOTCH4 / Q99466  / reaction / complex
 ENSG00000148400 NOTCH1 / P46531  / complex / reaction
 ENSG00000134250 NOTCH2 / Q04721  / complex / reaction
 ENSG00000137845 ADAM10 / O14672 / ADAM metallopeptidase domain 10  / reaction






 

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