ENSG00000162804


Homo sapiens

Features
Gene ID: ENSG00000162804
  
Biological name :SNED1
  
Synonyms : Q8TER0 / SNED1 / sushi, nidogen and EGF like domains 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: q37.3
Gene start: 240998838
Gene end: 241095568
  
Corresponding Affymetrix probe sets: 1554798_at (Human Genome U133 Plus 2.0 Array)   1559421_at (Human Genome U133 Plus 2.0 Array)   213488_at (Human Genome U133 Plus 2.0 Array)   213493_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000394324
Ensembl peptide - ENSP00000386007
Ensembl peptide - ENSP00000401865
Ensembl peptide - ENSP00000308893
Ensembl peptide - ENSP00000342992
Ensembl peptide - ENSP00000384789
Ensembl peptide - ENSP00000384871
NCBI entrez gene - 25992     See in Manteia.
OMIM - 616634
RefSeq - XM_017003782
RefSeq - XM_017003776
RefSeq - XM_017003777
RefSeq - XM_017003778
RefSeq - XM_017003779
RefSeq - XM_017003780
RefSeq - XM_017003781
RefSeq - NM_001080437
RefSeq - XM_011510931
RefSeq - XM_011510932
RefSeq - XM_011510933
RefSeq - XM_011510934
RefSeq - XM_011510937
RefSeq - XM_017003773
RefSeq - XM_017003774
RefSeq - XM_017003775
RefSeq Peptide - NP_001073906
swissprot - H7BYY9
swissprot - H7C0D4
swissprot - H7C1R9
swissprot - B5MEF5
swissprot - Q8TER0
Ensembl - ENSG00000162804
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sned1ENSDARG00000044433Danio rerio
 SNED1ENSGALG00000043596Gallus gallus
 Sned1ENSMUSG00000047793Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NOTCH1 / P46531ENSG0000014840027
NOTCH2 / Q04721ENSG0000013425026
NOTCH3 / Q9UM47ENSG0000007418126
NOTCH4 / Q99466ENSG0000020430122
JAG1 / P78504 / jagged 1ENSG0000010138419
JAG2 / Q9Y219 / jagged 2ENSG0000018491619
DLL1 / O00548 / delta like canonical Notch ligand 1ENSG0000019871911
DLL4 / Q9NR61 / delta like canonical Notch ligand 4ENSG0000012891710


Protein motifs (from Interpro)
Interpro ID Name
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000436  Sushi/SCR/CCP domain
 IPR000742  EGF-like domain
 IPR001881  EGF-like calcium-binding domain
 IPR003886  NIDO domain
 IPR003961  Fibronectin type III
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR013032  EGF-like, conserved site
 IPR013783  Immunoglobulin-like fold
 IPR018097  EGF-like calcium-binding, conserved site
 IPR035976  Sushi/SCR/CCP superfamily
 IPR036116  Fibronectin type III superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007160 cell-matrix adhesion IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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