ENSMUSG00000047793


Mus musculus

Features
Gene ID: ENSMUSG00000047793
  
Biological name :Sned1
  
Synonyms : Sned1 / sushi, nidogen and EGF like domains 1
  
Possible biological names infered from orthology : Q8TER0
  
Species: Mus musculus
  
Chr. number: 1
Strand: 1
Band: D
Gene start: 93235841
Gene end: 93301065
  
Corresponding Affymetrix probe sets: 10348739 (MoGene1.0st)   1435603_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000050832
Ensembl peptide - ENSMUSP00000132455
NCBI entrez gene - 208777     See in Manteia.
MGI - MGI:3045960
RefSeq - XM_006529320
RefSeq - XM_006529317
RefSeq - XM_006529318
RefSeq - XM_006529319
RefSeq - NM_172463
RefSeq Peptide - NP_766051
swissprot - F6V5H4
swissprot - A0A0R4J0N0
Ensembl - ENSMUSG00000047793
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sned1ENSDARG00000044433Danio rerio
 SNED1ENSGALG00000043596Gallus gallus
 SNED1ENSG00000162804Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Notch1 / Q01705 / Neurogenic locus notch homolog protein 1 Notch 1 extracellular truncation Notch 1 intracellular domain / P46531*ENSMUSG0000002692328
Notch2 / Q04721*ENSMUSG0000002787827
Notch3 / Q61982 / Neurogenic locus notch homolog protein 3 Notch 3 extracellular truncation Notch 3 intracellular domain / Q9UM47*ENSMUSG0000003814626
Notch4 / Q99466*ENSMUSG0000001546823
Jag2 / Q9QYE5 / Protein jagged-2 / Q9Y219* / jagged 2*ENSMUSG0000000279920
Jag1 / Q9QXX0 / Protein jagged-1 / P78504* / jagged 1*ENSMUSG0000002727619
Dll1 / Q61483 / Delta-like protein 1 Dll1-soluble form Dll1-derived cell-associated form Dll1-intracellular form / O00548* / delta like canonical Notch ligand 1*ENSMUSG0000001477311
Dll4 / Q9JI71 / Delta-like protein 4 / Q9NR61* / delta like canonical Notch ligand 4*ENSMUSG0000002731410


Protein motifs (from Interpro)
Interpro ID Name
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000436  Sushi/SCR/CCP domain
 IPR000742  EGF-like domain
 IPR001881  EGF-like calcium-binding domain
 IPR003886  NIDO domain
 IPR003961  Fibronectin type III
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR013032  EGF-like, conserved site
 IPR013783  Immunoglobulin-like fold
 IPR018097  EGF-like calcium-binding, conserved site
 IPR035976  Sushi/SCR/CCP superfamily
 IPR036116  Fibronectin type III superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007160 cell-matrix adhesion IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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