ENSDARG00000044433


Danio rerio

Features
Gene ID: ENSDARG00000044433
  
Biological name :sned1
  
Synonyms : sned1 / sushi, nidogen and EGF-like domains 1
  
Possible biological names infered from orthology : Q8TER0
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 27451879
Gene end: 27510625
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000065254
Ensembl peptide - ENSDARP00000156009
NCBI entrez gene - 100001751     See in Manteia.
RefSeq - XM_017356625
swissprot - E7F2S5
ZFIN ID - ZDB-GENE-100913-1
Ensembl - ENSDARG00000044433
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNED1ENSGALG00000043596Gallus gallus
 SNED1ENSG00000162804Homo sapiens
 Sned1ENSMUSG00000047793Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
notch1b / NOTCH1* / P46531* / Q01705* / Neurogenic locus notch homolog protein 1 Notch 1 extracellular truncation Notch 1 intracellular domain*ENSDARG0000005209426
notch1a / NOTCH1* / P46531* / Q01705* / Neurogenic locus notch homolog protein 1 Notch 1 extracellular truncation Notch 1 intracellular domain*ENSDARG0000010355425
notch2 / Q04721*ENSDARG0000004313025
notch3 / Q9UM47*ENSDARG0000005213925
jag1b / jagged 1b / JAG1* / P78504* / Q9QXX0* / jagged 1* / Protein jagged-1 *ENSDARG0000001316817
jag2a / jagged 2a / JAG2* / Q9Y219* / jagged 2*ENSDARG0000001424617
jag1a / jagged 1a / JAG1* / P78504* / jagged 1*ENSDARG0000003028917
jag2b / jagged 2b / JAG2* / Q9QYE5* / Q9Y219* / jagged 2* / Protein jagged-2 *ENSDARG0000002138917
dld / deltaD / DLL1* / O00548* / Q61483* / delta like canonical Notch ligand 1* / Delta-like protein 1 Dll1-soluble form Dll1-derived cell-associated form Dll1-intracellular form*ENSDARG0000002021910
dla / deltaA / DLL1* / O00548* / Q61483* / delta like canonical Notch ligand 1* / Delta-like protein 1 Dll1-soluble form Dll1-derived cell-associated form Dll1-intracellular form*ENSDARG0000001079110
dlc / deltaCENSDARG000000023369
dll4 / delta-like 4 (Drosophila) / Q9JI71* / Q9NR61* / Delta-like protein 4 * / delta like canonical Notch ligand 4*ENSDARG000000704259
dlb / deltaB / O57409ENSDARG000000042329
si:ch73-281k2.5 / NOTCH2* / Q04721*ENSDARG000001043293


Protein motifs (from Interpro)
Interpro ID Name
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000436  Sushi/SCR/CCP domain
 IPR000742  EGF-like domain
 IPR001881  EGF-like calcium-binding domain
 IPR003886  NIDO domain
 IPR003961  Fibronectin type III
 IPR013032  EGF-like, conserved site
 IPR013783  Immunoglobulin-like fold
 IPR018097  EGF-like calcium-binding, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007160 cell-matrix adhesion IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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