ENSDARG00000000472


Danio rerio

Features
Gene ID: ENSDARG00000000472
  
Biological name :cntn2
  
Synonyms : cntn2 / contactin 2
  
Possible biological names infered from orthology : Q02246 / Q61330
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 23933016
Gene end: 23987682
  
Corresponding Affymetrix probe sets: Dr.8147.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000000486
Ensembl peptide - ENSDARP00000149940
swissprot - F1QCV0
ZFIN ID - ZDB-GENE-990630-12
Ensembl - ENSDARG00000000472
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CNTN2ENSGALG00000000653Gallus gallus
 CNTN2ENSG00000184144Homo sapiens
 Cntn2ENSMUSG00000053024Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cntn4 / contactin 4 / Q69Z26* / Q8IWV2*ENSDARG0000009816138
cntn3b / contactin 3b / CNTN3* / Q9P232* / contactin 3*ENSDARG0000005345438
cntn1b / contactin 1b / CNTN1* / P12960* / Q12860* / contactin 1* / Mus musculus contactin 1 (Cntn1), transcript variant 4, mRNA.*ENSDARG0000004568538
cntn3a.1 / contactin 3a, tandem duplicate 1 / CNTN4* / Q8IWV2* / Q69Z26* / contactin 4*ENSDARG0000006288037
cntn5 / contactin 5 / O94779* / P68500*ENSDARG0000002158436
cntn3a.2 / contactin 3a, tandem duplicate 2 / CNTN3* / Q07409* / Q9P232* / contactin 3*ENSDARG0000001364734
nfasca / neurofascin homolog (chicken) a / NFASC* / O94856* / Q810U3* / neurofascin*ENSDARG0000006109925
chl1a / cell adhesion molecule L1-like a / CHL1* / P70232* / O00533* / cell adhesion molecule L1 like* / Neural cell adhesion molecule L1-like protein Processed neural cell adhesion molecul...ENSDARG0000007788125
chl1b / cell adhesion molecule L1-like b / CHL1* / P70232* / O00533* / cell adhesion molecule L1 like* / Neural cell adhesion molecule L1-like protein Processed neural cell adhesion molecul...ENSDARG0000010310925
nrcama / neuronal cell adhesion molecule a / NRCAM* / Q810U4* / Q92823* / neuronal cell adhesion molecule*ENSDARG0000000639624
cntn1a / contactin 1a / CNTN1* / Q12860* / contactin 1*ENSDARG0000008784324
l1cama / L1 cell adhesion molecule, paralog a / L1CAM* / P32004* / L1 cell adhesion molecule*ENSDARG0000000714923
l1camb / L1 cell adhesion molecule, paralog b / L1CAM* / P32004* / L1 cell adhesion molecule*ENSDARG0000001502523
BX942846.1 / CNTN6* / Q9JMB8* / Q9UQ52* / contactin 6*ENSDARG0000010427716
LO017951.1 / CNTN6* / Q9UQ52* / contactin 6*ENSDARG0000011276713
CU234171.1 / NFASC* / O94856* / neurofascin*ENSDARG0000005691010


Protein motifs (from Interpro)
Interpro ID Name
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR003961  Fibronectin type III
 IPR007110  Immunoglobulin-like domain
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold
 IPR032991  Contactin-2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001764 neuron migration IMP
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0007409 axonogenesis IMP
 biological_processGO:0007417 central nervous system development IMP
 biological_processGO:0031175 neuron projection development IEA
 biological_processGO:0045773 positive regulation of axon extension IMP
 biological_processGO:0048677 axon extension involved in regeneration IMP


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000075 spinal cord spinal cord axon extension involved in regeneration decreased occurrence , abnormal
Show

 ZFA:0000206 facial nerve motor nucleus facial nerve motor nucleus motor neuron mislocalised , abnormal
Show

 ZFA:0000295 trigeminal ganglion trigeminal ganglion disorganized , abnormal
trigeminal ganglion dispersed , abnormal
Show

 ZFA:0000543 medial longitudinal fasciculus medial longitudinal fasciculus morphology , abnormal
Show

 ZFA:0001094 whole organism whole organism swimming decreased occurrence , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr