ENSMUSG00000039488


Mus musculus

Features
Gene ID: ENSMUSG00000039488
  
Biological name :Cntn5
  
Synonyms : Cntn5 / Contactin-5 / P68500
  
Possible biological names infered from orthology : O94779
  
Species: Mus musculus
  
Chr. number: 9
Strand: -1
Band: A1
Gene start: 9660891
Gene end: 10904775
  
Corresponding Affymetrix probe sets: 10590865 (MoGene1.0st)   
  
Cross references: Ensembl peptide - ENSMUSP00000073769
Ensembl peptide - ENSMUSP00000124214
Ensembl peptide - ENSMUSP00000124327
Ensembl peptide - ENSMUSP00000135903
NCBI entrez gene - 244682     See in Manteia.
MGI - MGI:3042287
RefSeq - XM_017313363
RefSeq - NM_001033359
RefSeq - NM_001170787
RefSeq - XM_006509870
RefSeq - XM_006509872
RefSeq - XM_006509873
RefSeq - XM_011242366
RefSeq - XM_006509866
RefSeq - XM_006509867
RefSeq - XM_006509868
RefSeq - XM_006509869
RefSeq Peptide - NP_001028531
RefSeq Peptide - NP_001164258
swissprot - P68500
swissprot - E9PYK7
Ensembl - ENSMUSG00000039488
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cntn5ENSDARG00000021584Danio rerio
 CNTN5ENSGALG00000017197Gallus gallus
 CNTN5ENSG00000149972Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Cntn3 / Q07409 / Contactin-3 / Q9P232*ENSMUSG0000003007550
Cntn4 / Q69Z26 / Contactin-4 / Q8IWV2*ENSMUSG0000006429350
Cntn6 / Q9JMB8 / Contactin-6 / Q9UQ52*ENSMUSG0000003009246
Cntn1 / P12960 / Mus musculus contactin 1 (Cntn1), transcript variant 4, mRNA. / Q12860* / contactin 1*ENSMUSG0000005502241
Cntn2 / Q61330 / Contactin-2 / Q02246*ENSMUSG0000005302440
Chl1 / P70232 / Neural cell adhesion molecule L1-like protein Processed neural cell adhesion molecule L1-like protein / O00533* / cell adhesion molecule L1 like*ENSMUSG0000003007725
L1cam / L1 cell adhesion molecule / P32004*ENSMUSG0000003139125
Nrcam / Q810U4 / Neuronal cell adhesion molecule / Q92823*ENSMUSG0000002059825
Nfasc / Q810U3 / Neurofascin / O94856*ENSMUSG0000002644224


Protein motifs (from Interpro)
Interpro ID Name
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR003961  Fibronectin type III
 IPR007110  Immunoglobulin-like domain
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold
 IPR032989  Contactin-5
 IPR036116  Fibronectin type III superfamily
 IPR036179  Immunoglobulin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007605 sensory perception of sound IMP
 cellular_componentGO:0005829 cytosol ISO
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031225 anchored component of membrane IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
Post-translational modification: synthesis of GPI-anchored proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001496 audiogenic seizures "a reflex seizure triggered by loud noises" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Bdnftm3Jae/Bdnftm3Jae,Tg(Eno2tTA)5030Nes/0,Tg(tetO-cre)1Jaw/0
Genetic Background: involves: 129/Sv * C57BL/6 * ICR * SJL

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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