Manteia

ENSMUSG00000064293

Mus musculus

Features

Gene ID:	ENSMUSG00000064293

Biological name :	Cntn4

Synonyms :	Cntn4 / Contactin-4 / Q69Z26

Possible biological names infered from orthology :	Q8IWV2

Species:	Mus musculus

Chr. number:	6
Strand:	1
Band:	E1
Gene start:	105677660
Gene end:	106699310

Corresponding Affymetrix probe sets:	10540359 (MoGene1.0st) 1438782_at (Mouse Genome 430 2.0 Array) 1460321_at (Mouse Genome 430 2.0 Array)

Cross references:	Ensembl peptide - ENSMUSP00000108889 Ensembl peptide - ENSMUSP00000078385 Ensembl peptide - ENSMUSP00000086616 Ensembl peptide - ENSMUSP00000108883 Ensembl peptide - ENSMUSP00000108885 Ensembl peptide - ENSMUSP00000108886 NCBI entrez gene - 269784 See in Manteia. MGI - MGI:1095737 RefSeq - XM_017321599 RefSeq - NM_001109749 RefSeq - NM_001109751 RefSeq - NM_173004 RefSeq - XM_006506195 RefSeq - XM_006506196 RefSeq - XM_006506197 RefSeq - XM_006506198 RefSeq - XM_017321598 RefSeq - XM_006506193 RefSeq - XM_006506194 RefSeq Peptide - NP_001103219 RefSeq Peptide - NP_001103221 RefSeq Peptide - NP_766592 swissprot - Q69Z26 swissprot - F8WH58 Ensembl - ENSMUSG00000064293

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
Cntn3 / Q07409 / Contactin-3 / Q9P232*	ENSMUSG00000030075	65
Cntn6 / Q9JMB8 / Contactin-6 / Q9UQ52*	ENSMUSG00000030092	59
Cntn5 / P68500 / Contactin-5 / O94779*	ENSMUSG00000039488	54
Cntn1 / P12960 / Mus musculus contactin 1 (Cntn1), transcript variant 4, mRNA. / Q12860* / contactin 1*	ENSMUSG00000055022	43
Cntn2 / Q61330 / Contactin-2 / Q02246*	ENSMUSG00000053024	42
Nrcam / Q810U4 / Neuronal cell adhesion molecule / Q92823*	ENSMUSG00000020598	27
L1cam / L1 cell adhesion molecule / P32004*	ENSMUSG00000031391	27
Nfasc / Q810U3 / Neurofascin / O94856*	ENSMUSG00000026442	26
Chl1 / P70232 / Neural cell adhesion molecule L1-like protein Processed neural cell adhesion molecule L1-like protein / O00533* / cell adhesion molecule L1 like*	ENSMUSG00000030077	26

Protein motifs (from Interpro)

Interpro ID	Name
IPR003598	Immunoglobulin subtype 2
IPR003599	Immunoglobulin subtype
IPR003961	Fibronectin type III
IPR007110	Immunoglobulin-like domain
IPR013098	Immunoglobulin I-set
IPR013783	Immunoglobulin-like fold
IPR033007	Contactin-4
IPR036116	Fibronectin type III superfamily
IPR036179	Immunoglobulin-like domain superfamily

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0007155	cell adhesion	IEA
biological_process	GO:0007399	nervous system development	ISS
biological_process	GO:0007411	axon guidance	IEA
biological_process	GO:0007420	brain development	IEA
biological_process	GO:0031175	neuron projection development	IEA
biological_process	GO:0045665	negative regulation of neuron differentiation	IEA
cellular_component	GO:0005576	extracellular region	IEA
cellular_component	GO:0005886	plasma membrane	IEA
cellular_component	GO:0016020	membrane	IEA
cellular_component	GO:0031225	anchored component of membrane	IEA
molecular_function	GO:0005515	protein binding	IEA

Pathways (from Reactome)

Pathway description

Phenotype (from MGI, Zfin or HPO)

ID	Phenotype	Definition	Genetic BG
MP:0005236	abnormal olfactory nerve morphology	"anomalous structure of the first cranial nerve, which conveys the sense of smell" [MeSH:National Library of Medicine - Medical Subject Headings , 2003]	Show Allelic Composition: Stat3^tm1Jbha/Stat3^tm1Jbha,Tg(Fabp4-cre)1Rev/0 Genetic Background: involves: 129S/SvEv * C57BL/6

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr