ENSMUSG00000030092


Mus musculus

Features
Gene ID: ENSMUSG00000030092
  
Biological name :Cntn6
  
Synonyms : Cntn6 / Contactin-6 / Q9JMB8
  
Possible biological names infered from orthology : Q9UQ52
  
Species: Mus musculus
  
Chr. number: 6
Strand: 1
Band: E1
Gene start: 104492790
Gene end: 104863406
  
Corresponding Affymetrix probe sets: 10540333 (MoGene1.0st)   1422649_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000124714
Ensembl peptide - ENSMUSP00000086623
Ensembl peptide - ENSMUSP00000124025
Ensembl peptide - ENSMUSP00000124531
NCBI entrez gene - 53870     See in Manteia.
MGI - MGI:1858223
RefSeq - XM_017321679
RefSeq - XM_006506384
RefSeq - XM_006506385
RefSeq - XM_011241409
RefSeq - XM_017321678
RefSeq - NM_017383
RefSeq - XM_006506381
RefSeq - XM_006506382
RefSeq - XM_006506383
RefSeq Peptide - NP_059079
swissprot - E0CY26
swissprot - E0CXE3
swissprot - Q9JMB8
Ensembl - ENSMUSG00000030092
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 BX942846.1ENSDARG00000104277Danio rerio
 LO017951.1ENSDARG00000112767Danio rerio
 CNTN6ENSGALG00000007927Gallus gallus
 CNTN6ENSG00000134115Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Cntn4 / Q69Z26 / Contactin-4 / Q8IWV2*ENSMUSG0000006429359
Cntn3 / Q07409 / Contactin-3 / Q9P232*ENSMUSG0000003007558
Cntn5 / P68500 / Contactin-5 / O94779*ENSMUSG0000003948849
Cntn2 / Q61330 / Contactin-2 / Q02246*ENSMUSG0000005302442
Cntn1 / P12960 / Mus musculus contactin 1 (Cntn1), transcript variant 4, mRNA. / Q12860* / contactin 1*ENSMUSG0000005502241
L1cam / L1 cell adhesion molecule / P32004*ENSMUSG0000003139127
Nrcam / Q810U4 / Neuronal cell adhesion molecule / Q92823*ENSMUSG0000002059827
Chl1 / P70232 / Neural cell adhesion molecule L1-like protein Processed neural cell adhesion molecule L1-like protein / O00533* / cell adhesion molecule L1 like*ENSMUSG0000003007725
Nfasc / Q810U3 / Neurofascin / O94856*ENSMUSG0000002644224


Protein motifs (from Interpro)
Interpro ID Name
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR003961  Fibronectin type III
 IPR007110  Immunoglobulin-like domain
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold
 IPR033009  Contactin-6
 IPR036116  Fibronectin type III superfamily
 IPR036179  Immunoglobulin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007219 Notch signaling pathway IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0022008 neurogenesis IEA
 biological_processGO:0030182 neuron differentiation IEA
 biological_processGO:0045747 positive regulation of Notch signaling pathway IDA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031225 anchored component of membrane IEA
 molecular_functionGO:0005112 Notch binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001405 impaired coordination "reduced ability to execute integrated movements of muscle" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator, Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
Show

Allelic Composition: Mtmr2tm1Ueli/Mtmr2tm1Ueli
Genetic Background: involves: 129S6/SvEvTac * C57BL/6

 MP:0009969 abnormal cerebral cortex pyramidal cell morphology "any structural anomaly of the projection neurons in the pyramidal cell layer of the cerebral cortex" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition"]
Show

Allelic Composition: Igf2tm1Rob/Igf2+,Igf2rtm1Arge/Igf2r+,M6prtm1Hlk/M6pr+
Genetic Background: involves: 129/Sv * 129P2/OlaHsd * 129S/SvEv

Allelic Composition: Chl1tm1Mtg/Chl1+,Cntn6tm1Kwat/Cntn6+
Genetic Background: involves: 129P2/OlaHsd * 129X1/SvJ * C57BL/6

Allelic Composition: Cntn6tm1Kwat/Cntn6+
Genetic Background: involves: 129P2/OlaHsd * 129X1/SvJ * C57BL/6

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000030077 Chl1 / P70232 / Neural cell adhesion molecule L1-like protein Processed neural cell adhesion molecule L1-like protein / O00533* / cell adhesion molecule L1 like*  / reaction / complex






 

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