ENSG00000101680


Homo sapiens

Features
Gene ID: ENSG00000101680
  
Biological name :LAMA1
  
Synonyms : LAMA1 / laminin subunit alpha 1 / P25391
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 18
Strand: -1
Band: p11.31
Gene start: 6941744
Gene end: 7117814
  
Corresponding Affymetrix probe sets: 222346_at (Human Genome U133 Plus 2.0 Array)   227048_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000491821
Ensembl peptide - ENSP00000374309
NCBI entrez gene - 284217     See in Manteia.
OMIM - 150320
RefSeq - XM_011525657
RefSeq - NM_005559
RefSeq - XM_011525655
RefSeq - XM_011525656
RefSeq Peptide - NP_005550
swissprot - A0A1W2PQN4
swissprot - P25391
Ensembl - ENSG00000101680
  
Related genetic diseases (OMIM): 615960 - Poretti-Boltshauser syndrome, 615960
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lama1ENSDARG00000102277Danio rerio
 LAMA1ENSGALG00000014615Gallus gallus
 Lama1ENSMUSG00000032796Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LAMA2 / P24043 / laminin subunit alpha 2ENSG0000019656946
LAMA5 / O15230 / laminin subunit alpha 5ENSG0000013070227
LAMA3 / Q16787 / laminin subunit alpha 3ENSG0000005374726
LAMC1 / P11047 / laminin subunit gamma 1ENSG0000013586212
LAMA4 / Q16363 / laminin subunit alpha 4ENSG0000011276912
LAMB1 / P07942 / laminin subunit beta 1ENSG0000009113612
LAMB2 / P55268 / laminin subunit beta 2ENSG0000017203711
LAMC3 / Q9Y6N6 / laminin subunit gamma 3ENSG0000005055511
LAMB4 / A4D0S4 / laminin subunit beta 4ENSG0000009112811
LAMC2 / Q13753 / laminin subunit gamma 2ENSG000000580858
LAMB3 / Q13751 / laminin subunit beta 3ENSG000001968787
NTN4 / Q9HB63 / netrin 4ENSG000000745275


Protein motifs (from Interpro)
Interpro ID Name
 IPR000034  Laminin IV
 IPR000742  EGF-like domain
 IPR001791  Laminin G domain
 IPR002049  Laminin EGF domain
 IPR008211  Laminin, N-terminal
 IPR008979  Galactose-binding-like domain superfamily
 IPR009254  Laminin alpha, domain I
 IPR010307  Laminin domain II
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007166 cell surface receptor signaling pathway ISS
 biological_processGO:0030155 regulation of cell adhesion IEA
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0030334 regulation of cell migration IEA
 biological_processGO:0045995 regulation of embryonic development IEA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005604 basement membrane IEA
 cellular_componentGO:0005606 laminin-1 complex IPI
 cellular_componentGO:0005608 laminin-3 complex IPI
 cellular_componentGO:0005615 extracellular space IDA
 cellular_componentGO:0016020 membrane IDA
 cellular_componentGO:0031012 extracellular matrix TAS
 molecular_functionGO:0005102 signaling receptor binding IEA
 molecular_functionGO:0005201 extracellular matrix structural constituent ISS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008022 protein C-terminus binding IPI


Pathways (from Reactome)
Pathway description
Laminin interactions
Non-integrin membrane-ECM interactions
ECM proteoglycans
L1CAM interactions
MET activates PTK2 signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000545 Myopia 
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 HP:0000556 Retinal dystrophy 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000646 Amblyopia "Reduced visual acuity that is uncorrectable by lenses in the absence of detectable anatomic defects in the eye or visual pathways. Ambylopia can result from visual deprivation during the critical period of development of visual abilities which lasts to about the age of 8 years. Thus, ambylopia can result from strabismus, anisometropia, or high hypermetropia in there is a failure to form a focused image in one or both eyes." [HPO:curators]
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 HP:0000657 Oculomotor apraxia 
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 HP:0000750 Impaired language development 
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 HP:0001105 Retinal atrophy 
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 HP:0001270 Motor retardation 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001320 Cerebellar vermis hypoplasia 
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 HP:0002198 Enlarged fourth ventricle 
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 HP:0002350 Cerebellar cysts 
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 HP:0002518 Periventricular white matter changes 
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 HP:0003828 Variable expressivity 
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 HP:0007033 Cerebellar dysplasia 
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 HP:0030329 Retinal thinning "Reduced anteroposterior thickness of the retina. This phenotype can be appreciated by retinal optical coherence tomography (OCT)." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000091136 LAMB1 / P07942 / laminin subunit beta 1  / complex
 ENSG00000135862 LAMC1 / P11047 / laminin subunit gamma 1  / complex
 ENSG00000198947 DMD / P11532 / dystrophin  / complex / reaction
 ENSG00000182871 P39060 / COL18A1 / collagen type XVIII alpha 1 chain  / reaction / complex
 ENSG00000198910 L1CAM / P32004 / L1 cell adhesion molecule  / reaction / complex
 ENSG00000172037 LAMB2 / P55268 / laminin subunit beta 2  / complex
 ENSG00000173402 DAG1 / Q14118 / dystroglycan 1  / reaction / complex






 

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