ENSG00000196569


Homo sapiens

Features
Gene ID: ENSG00000196569
  
Biological name :LAMA2
  
Synonyms : LAMA2 / laminin subunit alpha 2 / P24043
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: 1
Band: q22.33
Gene start: 128883141
Gene end: 129516569
  
Corresponding Affymetrix probe sets: 205116_at (Human Genome U133 Plus 2.0 Array)   213519_s_at (Human Genome U133 Plus 2.0 Array)   216839_at (Human Genome U133 Plus 2.0 Array)   216840_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000481744
Ensembl peptide - ENSP00000493888
Ensembl peptide - ENSP00000400365
Ensembl peptide - ENSP00000480802
NCBI entrez gene - 3908     See in Manteia.
OMIM - 156225
RefSeq - XM_017010852
RefSeq - NM_001079823
RefSeq - XM_005266981
RefSeq - XM_005266982
RefSeq - XM_011535820
RefSeq - XM_017010851
RefSeq - NM_000426
RefSeq Peptide - NP_000417
RefSeq Peptide - NP_001073291
swissprot - A0A087WYF1
swissprot - P24043
swissprot - A0A087WX80
Ensembl - ENSG00000196569
  
Related genetic diseases (OMIM): 607855 - Muscular dystrophy, congenital merosin-deficient, 607855
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CABZ01065423.1ENSDARG00000112019Danio rerio
 lama2ENSDARG00000099390Danio rerio
 LAMA2ENSGALG00000042388Gallus gallus
 Lama2ENSMUSG00000019899Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LAMA1 / P25391 / laminin subunit alpha 1ENSG0000010168045
LAMA5 / O15230 / laminin subunit alpha 5ENSG0000013070228
LAMA3 / Q16787 / laminin subunit alpha 3ENSG0000005374727
LAMA4 / Q16363 / laminin subunit alpha 4ENSG0000011276913
LAMB4 / A4D0S4 / laminin subunit beta 4ENSG0000009112812
LAMC1 / P11047 / laminin subunit gamma 1ENSG0000013586212
LAMB1 / P07942 / laminin subunit beta 1ENSG0000009113612
LAMC3 / Q9Y6N6 / laminin subunit gamma 3ENSG0000005055512
LAMB2 / P55268 / laminin subunit beta 2ENSG0000017203712
LAMC2 / Q13753 / laminin subunit gamma 2ENSG000000580858
LAMB3 / Q13751 / laminin subunit beta 3ENSG000001968787
NTN4 / Q9HB63 / netrin 4ENSG000000745275


Protein motifs (from Interpro)
Interpro ID Name
 IPR000034  Laminin IV
 IPR000742  EGF-like domain
 IPR001791  Laminin G domain
 IPR002049  Laminin EGF domain
 IPR008211  Laminin, N-terminal
 IPR008979  Galactose-binding-like domain superfamily
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR009254  Laminin alpha, domain I
 IPR010307  Laminin domain II
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007411 axon guidance IEA
 biological_processGO:0007517 muscle organ development TAS
 biological_processGO:0014037 Schwann cell differentiation IEA
 biological_processGO:0030155 regulation of cell adhesion IEA
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0030334 regulation of cell migration IEA
 biological_processGO:0032224 positive regulation of synaptic transmission, cholinergic IEA
 biological_processGO:0045995 regulation of embryonic development IEA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005604 basement membrane TAS
 cellular_componentGO:0005605 basal lamina IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0031012 extracellular matrix ISS
 cellular_componentGO:0042383 sarcolemma IEA
 cellular_componentGO:0043197 dendritic spine IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005102 signaling receptor binding IEA
 molecular_functionGO:0005198 structural molecule activity TAS


Pathways (from Reactome)
Pathway description
Laminin interactions
Non-integrin membrane-ECM interactions
ECM proteoglycans
MET activates PTK2 signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000158 Macroglossia "Increased length and width of the tongue." [pmid:19125428]
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 HP:0000194 Open mouth 
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 HP:0000602 Ophthalmoplegia 
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 HP:0000649 Abnormality of vision evoked potentials 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001284 Areflexia 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001302 Pachygyria "A congenital abnormality of the cerebral hemisphere chacterized by unusually thick gyrations (convolutions) of the cerebral cortex." [HPO:curators]
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 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
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 HP:0001371 Contractures 
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 HP:0001612 Weak cry 
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 HP:0001638 Cardiomyopathy 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002058 Myopathic facies "A facial appearance characteristic of myopathic conditions. The face appears expressionless with sunken cheeks, bilateral ptosis, and inability to elevate the corners of the mouth, due to muscle weakness." [HPO:curators]
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 HP:0002092 Pulmonary hypertension 
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 HP:0002121 Absence seizures "Recurrent absence seizures are `generalized seizures` (HP:0002197) that are characterized by a sudden cessation of motor activity and by a blank facial expression with flickering of the eyelids. There is no convulsive muscular activity or loss of postural control." [HPO:probinson]
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 HP:0002181 Cerebral edema "Abnormal accumulation of fluid in the brain." [HPO:curators]
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 HP:0002375 Hypokinesia 
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 HP:0002446 Astrocytosis 
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 HP:0002536 Abnormal cortical gyration "An abnormality of the gyri (i.e., the ridges) of the cerebral cortex of the brain." [HPO:curators]
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 HP:0002540 Inability to walk 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002747 Respiratory insufficiency due to muscle weakness 
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 HP:0002751 Kyphoscoliosis 
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 HP:0002783 Recurrent lower respiratory tract infections 
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 HP:0002791 Hypoventilation 
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 HP:0002835 Aspiration 
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 HP:0002878 Early respiratory failure 
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003307 Hyperlordosis 
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 HP:0003560 Muscular dystrophy "The term dystrophy means abnormal growth. However, muscular dystrophy is used to describe primary myopathies with a genetic basis and a progressive course characterized by progressive skeletal muscle weakness, defects in muscle proteins, and the apoptosis of muscle cells." [HPO:curators]
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 HP:0003577 Onset at birth 
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 HP:0003741 Congenital muscular dystrophy 
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 HP:0004325 Decreased body weight 
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 HP:0004878 Respiratory failure due to intercostal muscle and diaphragm involvement 
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 HP:0005216 Chewing difficulties 
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 HP:0006879 Pontocerebellar atrophy 
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 HP:0007103 Hypodensity of cerebral white matter on MRI 
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 HP:0007141 Sensorimotor neuropathy 
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 HP:0007359 Partial seizures "Recurrent partial `seizures` (HP:0001250). In a partial seizure, the electrical disturbance is limited to one part or side of the brain. That is, partial epilepsies are epileptic disorders in which clinical or laboratory findings disclose a localized origin of seizures." [HPO:curators]
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 HP:0008872 Feeding problems in infancy 
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 HP:0009025 Increased connective tissue "The presence of an abnormally increased amount of connective tissue." [HPO:curators]
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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 HP:0010754 Abnormality of the temperomandibular joint 
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 HP:0010808 Protruding tongue "Tongue extending beyond the alveolar ridges or teeth at rest." [pmid:19125428]
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 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
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 HP:0012664 Reduced ejection fraction "A diminution of the volumetric fraction of blood pumped out of the ventricle with each cardiac cycle." [HPO:probinson]
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 HP:0012747 Abnormal brainstem MRI signal intensity "A deviation from normal signal on magnetic resonance imaging (MIR) of the brainstem." [UToronto:htrang]
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 HP:0030234 Highly elevated creatine phosphokinase "An increased CPK level between 4X and 50X above the upper normal level." [Neuromics:vstraub]
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 HP:0100295 Muscle fiber atrophy 
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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 HP:0100614 Myositis "A general term for inflammation of the muscles without respect to the underlying cause." [HPO:sdoelken]
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 HP:0100750 Atelectasis 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000135862 LAMC1 / P11047 / laminin subunit gamma 1  / complex
 ENSG00000198947 DMD / P11532 / dystrophin  / complex / reaction
 ENSG00000091136 LAMB1 / P07942 / laminin subunit beta 1  / complex
 ENSG00000173402 DAG1 / Q14118 / dystroglycan 1  / reaction / complex
 ENSG00000050555 LAMC3 / Q9Y6N6 / laminin subunit gamma 3  / complex
 ENSG00000172037 LAMB2 / P55268 / laminin subunit beta 2  / complex






 

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