ENSG00000173402


Homo sapiens

Features
Gene ID: ENSG00000173402
  
Biological name :DAG1
  
Synonyms : DAG1 / dystroglycan 1 / Q14118
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: p21.31
Gene start: 49468703
Gene end: 49535618
  
Corresponding Affymetrix probe sets: 205417_s_at (Human Genome U133 Plus 2.0 Array)   212128_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000402443
Ensembl peptide - ENSP00000401805
Ensembl peptide - ENSP00000405859
Ensembl peptide - ENSP00000442600
Ensembl peptide - ENSP00000440705
Ensembl peptide - ENSP00000440590
Ensembl peptide - ENSP00000439334
Ensembl peptide - ENSP00000438421
Ensembl peptide - ENSP00000415321
Ensembl peptide - ENSP00000412067
Ensembl peptide - ENSP00000410145
Ensembl peptide - ENSP00000312435
Ensembl peptide - ENSP00000387859
Ensembl peptide - ENSP00000388833
Ensembl peptide - ENSP00000401382
NCBI entrez gene - 1605     See in Manteia.
OMIM - 128239
RefSeq - NM_001177639
RefSeq - NM_001165928
RefSeq - NM_001177634
RefSeq - NM_001177635
RefSeq - NM_001177636
RefSeq - NM_001177637
RefSeq - NM_001177638
RefSeq - NM_001177640
RefSeq - NM_001177641
RefSeq - NM_001177642
RefSeq - NM_001177643
RefSeq - NM_001177644
RefSeq - NM_004393
RefSeq Peptide - NP_001171110
RefSeq Peptide - NP_001171111
RefSeq Peptide - NP_001171113
RefSeq Peptide - NP_001171114
RefSeq Peptide - NP_001171115
RefSeq Peptide - NP_004384
RefSeq Peptide - NP_001159400
RefSeq Peptide - NP_001171105
RefSeq Peptide - NP_001171106
RefSeq Peptide - NP_001171107
RefSeq Peptide - NP_001171108
RefSeq Peptide - NP_001171109
RefSeq Peptide - NP_001171112
swissprot - A0A1D5RMP6
swissprot - C9JY76
swissprot - C9JQL4
swissprot - C9JLH6
swissprot - C9JEN1
swissprot - C9JEH2
swissprot - Q14118
swissprot - C9J6Z6
swissprot - C9J196
swissprot - C9JYS1
Ensembl - ENSG00000173402
  
Related genetic diseases (OMIM): 613818 - Muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 9, 613818
  616538 - Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 9, 616538
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 dag1ENSDARG00000016153Danio rerio
 DAG1ENSGALG00000037784Gallus gallus
 Dag1ENSMUSG00000039952Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006644  Dystroglycan-type cadherin-like
 IPR008465  Dystroglycan
 IPR013783  Immunoglobulin-like fold
 IPR015919  Cadherin-like
 IPR027468  Alpha-dystroglycan domain 2
 IPR030398  DG-type SEA domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001954 positive regulation of cell-matrix adhesion IEA
 biological_processGO:0002011 morphogenesis of an epithelial sheet IEA
 biological_processGO:0006493 protein O-linked glycosylation TAS
 biological_processGO:0006509 membrane protein ectodomain proteolysis IDA
 biological_processGO:0006607 NLS-bearing protein import into nucleus IDA
 biological_processGO:0007016 cytoskeletal anchoring at plasma membrane IMP
 biological_processGO:0007568 aging IEA
 biological_processGO:0010470 regulation of gastrulation IMP
 biological_processGO:0010717 regulation of epithelial to mesenchymal transition IMP
 biological_processGO:0014037 Schwann cell differentiation IEA
 biological_processGO:0014044 Schwann cell development IEA
 biological_processGO:0014894 response to denervation involved in regulation of muscle adaptation IEA
 biological_processGO:0016032 viral process IEA
 biological_processGO:0016340 calcium-dependent cell-matrix adhesion IEA
 biological_processGO:0016476 regulation of embryonic cell shape ISS
 biological_processGO:0019048 modulation by virus of host morphology or physiology IDA
 biological_processGO:0021675 nerve development IEA
 biological_processGO:0021682 nerve maturation IEA
 biological_processGO:0022011 myelination in peripheral nervous system IEA
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0030336 negative regulation of cell migration IMP
 biological_processGO:0031103 axon regeneration IEA
 biological_processGO:0031643 positive regulation of myelination IEA
 biological_processGO:0034453 microtubule anchoring IMP
 biological_processGO:0043403 skeletal muscle tissue regeneration IEA
 biological_processGO:0043409 negative regulation of MAPK cascade IMP
 biological_processGO:0043434 response to peptide hormone IEA
 biological_processGO:0045860 positive regulation of protein kinase activity IEA
 biological_processGO:0046718 viral entry into host cell IEA
 biological_processGO:0048714 positive regulation of oligodendrocyte differentiation IEA
 biological_processGO:0051898 negative regulation of protein kinase B signaling IMP
 biological_processGO:0060055 angiogenesis involved in wound healing IEA
 biological_processGO:0060441 epithelial tube branching involved in lung morphogenesis IEA
 biological_processGO:0060445 branching involved in salivary gland morphogenesis IEA
 biological_processGO:0071260 cellular response to mechanical stimulus IEA
 biological_processGO:0071397 cellular response to cholesterol IEA
 biological_processGO:0071679 commissural neuron axon guidance IEA
 biological_processGO:0071711 basement membrane organization IEA
 biological_processGO:1904261 positive regulation of basement membrane assembly involved in embryonic body morphogenesis IMP
 cellular_componentGO:0005576 extracellular region IDA
 cellular_componentGO:0005604 basement membrane IDA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0005796 Golgi lumen TAS
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005911 cell-cell junction IEA
 cellular_componentGO:0005913 cell-cell adherens junction IEA
 cellular_componentGO:0005925 focal adhesion IDA
 cellular_componentGO:0009897 external side of plasma membrane IEA
 cellular_componentGO:0016010 dystrophin-associated glycoprotein complex IDA
 cellular_componentGO:0016011 dystroglycan complex IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016323 basolateral plasma membrane IEA
 cellular_componentGO:0030027 lamellipodium IDA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030175 filopodium IDA
 cellular_componentGO:0031012 extracellular matrix IDA
 cellular_componentGO:0033268 node of Ranvier IEA
 cellular_componentGO:0034399 nuclear periphery IEA
 cellular_componentGO:0042383 sarcolemma IEA
 cellular_componentGO:0043034 costamere IEA
 cellular_componentGO:0044853 plasma membrane raft IEA
 cellular_componentGO:0045121 membrane raft IEA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0045211 postsynaptic membrane IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:0070938 contractile ring IDA
 molecular_functionGO:0001618 virus receptor activity IEA
 molecular_functionGO:0002162 dystroglycan binding IEA
 molecular_functionGO:0003779 actin binding IDA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008307 structural constituent of muscle IMP
 molecular_functionGO:0015631 tubulin binding IDA
 molecular_functionGO:0017166 vinculin binding IPI
 molecular_functionGO:0042169 SH2 domain binding IDA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0043236 laminin binding IEA
 molecular_functionGO:0043237 laminin-1 binding ISS
 molecular_functionGO:0051393 alpha-actinin binding IDA


Pathways (from Reactome)
Pathway description
Non-integrin membrane-ECM interactions
ECM proteoglycans
Defective POMGNT1 causes MDDGA3, MDDGB3 and MDDGC3
Defective POMT2 causes MDDGA2, MDDGB2 and MDDGC2
Defective POMT1 causes MDDGA1, MDDGB1 and MDDGC1
O-linked glycosylation
Regulation of expression of SLITs and ROBOs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000176 Submucous cleft palate "A cleft palate that is covered by the mucous membrane of the roof of the mouth, which can make the cleft more difficult to observe upon physical examination. Soft-palate submucous clefts are characterized by a midline deficiency or lack of muscle tissue. Hard-palate submucous clefts are characterized by bony defects in the midline of the bony palate. It may be possible to detect a submucous cleft palate upon palpation as a notch in the bony palate." [HPO:curators, pmid:19779505]
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 HP:0000193 Bifid uvula "A split or cleft uvula." [HPO:curators]
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 HP:0000238 Hydrocephalus 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000411 Protruding ears 
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 HP:0000482 Microcornea "A congenital abnormality of the `cornea` (FMA:58238) in which the cornea and the anterior segment of the eye are smaller than normal. The horizontal diameter of the cornea does not reach 10 mm even in adulthood." [HPO:probinson]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000528 Anophthalmia "Absence of a true eyeball." [HPO:curators]
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 HP:0000541 Detached retina 
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 HP:0000545 Myopia 
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 HP:0000556 Retinal dystrophy 
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 HP:0000557 Buphthalmos "Buphthalmos refers to a congenital open-angle glaucoma of the eye. The term buphthalmos (from Greek bous or ox and ophthalmos or eye) is descriptive of an enlarged eyeglobe resulting from increased intraocular pressure. The eyeglobe is especially prone to distension in newborns and infants because its collagen filaments are not as rigid as in adults and may easily be stretched." [HPO:curators]
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000612 Iris coloboma "A `coloboma` (HP:0000589) of the `iris` (FMA:58235)." [HPO:probinson]
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 HP:0000648 Optic atrophy 
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 HP:0000750 Impaired language development 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001284 Areflexia 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001302 Pachygyria "A congenital abnormality of the cerebral hemisphere chacterized by unusually thick gyrations (convolutions) of the cerebral cortex." [HPO:curators]
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 HP:0001305 Dandy-Walker malformation "A congenital brain malformation typically characterized by incomplete formation of the cerebellar vermis, dilation of the fourth ventricle, and enlargement of the posterior fossa. In layman s terms, Dandy Walker malformation is a cyst in the cerebellum (typically symmetrical) that is involved with the fourth ventricle. This may interfere with the body s ability to drain cerebrospinal fluid from the brain, resulting in hydrocephalus. Dandy Walker cysts are formed during early embryonic development, while the brain forms. The cyst in the cerebellum typically has several blood vessels running through it connecting to the brain, thereby prohibiting surgical removal." [HPO:curators]
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 HP:0001320 Cerebellar vermis hypoplasia 
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001328 Learning disability 
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 HP:0001331 Absent septum pellucidum "Absence of the septum pellucidum." [HPO:curators]
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 HP:0001344 Absent speech development 
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 HP:0001460 Aplasia/Hypoplasia involving the musculature "Absence or underdevelopment of the musculature." [HPO:curators]
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002126 Polymicrogyria "A congenital abnormality of the cerebral hemisphere characterized by an excessive number of small gyri (convolutions) on the surface of the brain." [HPO:curators]
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 HP:0002350 Cerebellar cysts 
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 HP:0002415 Leukodystrophy 
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 HP:0002421 Poor head control 
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 HP:0002514 Cerebral calcification "The presence of calcification within brain structures." [HPO:curators]
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 HP:0002878 Early respiratory failure 
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 HP:0002938 Lumbar hyperlordosis 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003325 Limb-girdle muscle weakness "Weakness of the limb-girdle muscles (also known as the pelvic and shoulder girdles), that is, lack of strength of the muscles around the shoulders and the pelvis." [HPO:curators]
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 HP:0003391 Gower sign "A phenomen whereby patients are not able to stand up without the use of the hands owing to weakness of the proximal muscles of the lower limbs." [HPO:probinson]
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 HP:0003560 Muscular dystrophy "The term dystrophy means abnormal growth. However, muscular dystrophy is used to describe primary myopathies with a genetic basis and a progressive course characterized by progressive skeletal muscle weakness, defects in muscle proteins, and the apoptosis of muscle cells." [HPO:curators]
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 HP:0003593 Early onset 
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 HP:0003828 Variable expressivity 
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 HP:0006466 Contractures of the ankles 
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 HP:0007227 Brain macrogyria and polymicrogyria 
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 HP:0007731 Chorioretinal dysplasia 
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 HP:0007957 Variable degree of corneal opacities 
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 HP:0007973 Retinal dysplasia 
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 HP:0008736 Hypoplasia of penis 
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 HP:0010508 Metatarsus valgus "A condition in which the anterior part of the foot rotates outward away from the midline of the body and the heel remains straight." [HPO:curators]
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 HP:0012400 Abnormal aldolase level "An abnormal concentration of aldolase in the serum. Aldolase is an enzyme responsible for converting fructose 1,6-bisphosphate into the triose phosphates dihydroxyacetone phosphate and glyceraldehyde 3-phosphate." [HPO:probinson]
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 HP:0040081 Abnormal levels of creatine kinase in blood 
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 HP:0045040 Abnormal lactate dehydrogenase activity 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000091136 LAMB1 / P07942 / laminin subunit beta 1  / reaction / complex
 ENSG00000135862 LAMC1 / P11047 / laminin subunit gamma 1  / complex / reaction
 ENSG00000009830 POMT2 / Q9UKY4 / protein O-mannosyltransferase 2  / reaction
 ENSG00000198947 DMD / P11532 / dystrophin  / complex / reaction
 ENSG00000142798 HSPG2 / P98160 / heparan sulfate proteoglycan 2  / complex / reaction
 ENSG00000179915 NRXN1 / P58400 / Q9ULB1 / neurexin 1  / reaction / complex
 ENSG00000188157 AGRN / agrin / O00468  / complex / reaction
 ENSG00000173402 DAG1 / Q14118 / dystroglycan 1  / complex
 ENSG00000145147 SLIT2 / O94813 / slit guidance ligand 2  / complex / reaction
 ENSG00000162885 Q8NCR0 / B3GALNT2 / beta-1,3-N-acetylgalactosaminyltransferase 2  / reaction
 ENSG00000130714 POMT1 / Q9Y6A1 / protein O-mannosyltransferase 1  / reaction
 ENSG00000185900 POMK / Q9H5K3 / protein-O-mannose kinase  / reaction
 ENSG00000144647 Q8NAT1 / POMGNT2 / protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)  / reaction
 ENSG00000085998 Q8WZA1 / POMGNT1 / protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)  / reaction
 ENSG00000101680 LAMA1 / P25391 / laminin subunit alpha 1  / reaction / complex
 ENSG00000196569 LAMA2 / P24043 / laminin subunit alpha 2  / reaction / complex






 

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