ENSG00000091136


Homo sapiens

Features
Gene ID: ENSG00000091136
  
Biological name :LAMB1
  
Synonyms : LAMB1 / laminin subunit beta 1 / P07942
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: -1
Band: q31.1
Gene start: 107923799
Gene end: 108003255
  
Corresponding Affymetrix probe sets: 201505_at (Human Genome U133 Plus 2.0 Array)   211651_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000377189
Ensembl peptide - ENSP00000412686
Ensembl peptide - ENSP00000377191
Ensembl peptide - ENSP00000377190
Ensembl peptide - ENSP00000222399
NCBI entrez gene - 3912     See in Manteia.
OMIM - 150240
RefSeq - XM_017012202
RefSeq - NM_002291
RefSeq - XM_017012201
RefSeq Peptide - NP_002282
swissprot - G3XAI2
swissprot - E9PCS6
swissprot - P07942
swissprot - E7EPA6
swissprot - C9J296
Ensembl - ENSG00000091136
  
Related genetic diseases (OMIM): 615191 - Lissencephaly 5, 615191
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lamb1aENSDARG00000101209Danio rerio
 lamb1bENSDARG00000045524Danio rerio
 LAMB1ENSGALG00000007905Gallus gallus
 Lamb1ENSMUSG00000002900Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LAMB2 / P55268 / laminin subunit beta 2ENSG0000017203750
LAMB4 / A4D0S4 / laminin subunit beta 4ENSG0000009112840
LAMA5 / O15230 / laminin subunit alpha 5ENSG0000013070224
LAMA3 / Q16787 / laminin subunit alpha 3ENSG0000005374723
LAMA2 / P24043 / laminin subunit alpha 2ENSG0000019656921
LAMB3 / Q13751 / laminin subunit beta 3ENSG0000019687821
LAMA1 / P25391 / laminin subunit alpha 1ENSG0000010168020
LAMC3 / Q9Y6N6 / laminin subunit gamma 3ENSG0000005055517
LAMC1 / P11047 / laminin subunit gamma 1ENSG0000013586217
NTN4 / Q9HB63 / netrin 4ENSG0000007452713
LAMC2 / Q13753 / laminin subunit gamma 2ENSG0000005808512
LAMA4 / Q16363 / laminin subunit alpha 4ENSG0000011276911


Protein motifs (from Interpro)
Interpro ID Name
 IPR000742  EGF-like domain
 IPR002049  Laminin EGF domain
 IPR008211  Laminin, N-terminal
 IPR008979  Galactose-binding-like domain superfamily
 IPR013015  Laminin IV type B


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion TAS
 biological_processGO:0021812 neuronal-glial interaction involved in cerebral cortex radial glia guided migration IMP
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0030335 positive regulation of cell migration IDA
 biological_processGO:0031175 neuron projection development IDA
 biological_processGO:0034446 substrate adhesion-dependent cell spreading IDA
 biological_processGO:0035987 endodermal cell differentiation IEP
 biological_processGO:0042476 odontogenesis IDA
 biological_processGO:0043687 post-translational protein modification TAS
 biological_processGO:0044267 cellular protein metabolic process TAS
 biological_processGO:0050679 positive regulation of epithelial cell proliferation TAS
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005604 basement membrane TAS
 cellular_componentGO:0005606 laminin-1 complex TAS
 cellular_componentGO:0005607 laminin-2 complex TAS
 cellular_componentGO:0005615 extracellular space IDA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0031012 extracellular matrix IEA
 cellular_componentGO:0043257 laminin-8 complex TAS
 cellular_componentGO:0043259 laminin-10 complex IDA
 cellular_componentGO:0048471 perinuclear region of cytoplasm ISS
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005198 structural molecule activity NAS
 molecular_functionGO:0005201 extracellular matrix structural constituent IDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Degradation of the extracellular matrix
Laminin interactions
Non-integrin membrane-ECM interactions
ECM proteoglycans
L1CAM interactions
Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
MET activates PTK2 signaling
Post-translational protein phosphorylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000238 Hydrocephalus 
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000365 Hearing loss 
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000648 Optic atrophy 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001258 Spastic paraplegia 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0002085 Occipital encephalocele 
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 HP:0002132 Porencephaly 
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 HP:0002281 Gray matter heterotopias "Gray matter heterotopia is a neurological disorder caused by clumps of grey matter being located in the wrong part of the brain. It is characterized as a type of cortical dysplasia. The neurons in heterotopia appear to be normal, except for their mislocation; nuclear studies have shown glucose metabolism equal to that of normally positioned gray matter. The condition causes a variety of symptoms, but usually includes some degree of epilepsy or recurring seizures, and often affects the brain s ability to function on higher levels. Symptoms range from nonexistent to profound, in which case heterotopia can result in severe seizure disorder, loss of motor skills, and mental retardation." [HPO:curators]
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 HP:0002352 Leukoencephalopathy 
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 HP:0002365 Hypoplasia of the brainstem 
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 HP:0002500 Abnormality of the cerebral white matter 
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 HP:0003676 Progressive disorder 
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 HP:0003828 Variable expressivity 
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 HP:0007260 Type II lissencephaly 
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 HP:0011344 Severe global developmental delay "A severe delay in the achievement of motor or mental milestones in the domains of development of a child." [DDD:hvfirth]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000005884 ITGA3 / P26006 / integrin subunit alpha 3  / complex / reaction
 ENSG00000132470 ITGB4 / P16144 / integrin subunit beta 4  / reaction / complex
 ENSG00000101680 LAMA1 / P25391 / laminin subunit alpha 1  / complex
 ENSG00000130702 LAMA5 / O15230 / laminin subunit alpha 5  / complex
 ENSG00000050555 LAMC3 / Q9Y6N6 / laminin subunit gamma 3  / complex
 ENSG00000173402 DAG1 / Q14118 / dystroglycan 1  / complex / reaction
 ENSG00000198910 L1CAM / P32004 / L1 cell adhesion molecule  / reaction / complex
 ENSG00000112769 LAMA4 / Q16363 / laminin subunit alpha 4  / complex
 ENSG00000091409 ITGA6 / P23229 / integrin subunit alpha 6  / reaction / complex
 ENSG00000135862 LAMC1 / P11047 / laminin subunit gamma 1  / complex
 ENSG00000198947 DMD / P11532 / dystrophin  / reaction / complex
 ENSG00000157227 MMP14 / P50281 / matrix metallopeptidase 14  / reaction
 ENSG00000053747 LAMA3 / Q16787 / laminin subunit alpha 3  / complex
 ENSG00000150093 ITGB1 / P05556 / integrin subunit beta 1  / reaction / complex
 ENSG00000182871 P39060 / COL18A1 / collagen type XVIII alpha 1 chain  / reaction / complex
 ENSG00000187045 Q8IU80 / TMPRSS6 / transmembrane serine protease 6  / reaction
 ENSG00000196569 LAMA2 / P24043 / laminin subunit alpha 2  / complex






 

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