ENSG00000132470


Homo sapiens

Features
Gene ID: ENSG00000132470
  
Biological name :ITGB4
  
Synonyms : integrin subunit beta 4 / ITGB4 / P16144
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: 1
Band: q25.1
Gene start: 75721328
Gene end: 75757818
  
Corresponding Affymetrix probe sets: 204989_s_at (Human Genome U133 Plus 2.0 Array)   204990_s_at (Human Genome U133 Plus 2.0 Array)   211905_s_at (Human Genome U133 Plus 2.0 Array)   214292_at (Human Genome U133 Plus 2.0 Array)   230704_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000463651
Ensembl peptide - ENSP00000462494
Ensembl peptide - ENSP00000463788
Ensembl peptide - ENSP00000464259
Ensembl peptide - ENSP00000200181
Ensembl peptide - ENSP00000400217
Ensembl peptide - ENSP00000405536
NCBI entrez gene - 3691     See in Manteia.
OMIM - 147557
RefSeq - XM_011524751
RefSeq - NM_000213
RefSeq - NM_001005619
RefSeq - NM_001005731
RefSeq - NM_001321123
RefSeq - XM_005257309
RefSeq - XM_005257311
RefSeq - XM_006721866
RefSeq - XM_006721867
RefSeq - XM_006721868
RefSeq - XM_006721870
RefSeq Peptide - NP_001005619
RefSeq Peptide - NP_001005731
RefSeq Peptide - NP_001308052
RefSeq Peptide - NP_000204
swissprot - A0A024R8K7
swissprot - A0A024R8T0
swissprot - P16144
swissprot - J3KSH9
swissprot - J3QQL2
swissprot - J3QRK0
Ensembl - ENSG00000132470
  
Related genetic diseases (OMIM): 131800 - Epidermolysis bullosa of hands and feet, 131800
  226650 - Epidermolysis bullosa, junctional, non-Herlitz type, 226650
  226730 - Epidermolysis bullosa, junctional, with pyloric atresia, 226730
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 itgb4ENSDARG00000028507Danio rerio
 ITGB4ENSGALG00000002389Gallus gallus
 Itgb4ENSMUSG00000020758Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ITGB5 / P18084 / integrin subunit beta 5ENSG0000008278115
ITGB1 / P05556 / integrin subunit beta 1ENSG0000015009315
ITGB3 / P05106 / integrin subunit beta 3ENSG0000025920715
AC068234.1ENSG0000025975315
ITGB2 / P05107 / integrin subunit beta 2ENSG0000016025514
ITGB6 / P18564 / integrin subunit beta 6ENSG0000011522114
ITGB7 / P26010 / integrin subunit beta 7ENSG0000013962614
ITGB8 / P26012 / integrin subunit beta 8ENSG0000010585512
ITGBL1 / O95965 / integrin subunit beta like 1ENSG000001985427


Protein motifs (from Interpro)
Interpro ID Name
 IPR002369  Integrin beta subunit, VWA domain
 IPR003644  Na-Ca exchanger/integrin-beta4
 IPR003961  Fibronectin type III
 IPR012013  Integrin beta-4 subunit
 IPR012896  Integrin beta subunit, tail
 IPR013032  EGF-like, conserved site
 IPR013111  EGF-like domain, extracellular
 IPR013783  Immunoglobulin-like fold
 IPR015812  Integrin beta subunit
 IPR016201  PSI domain
 IPR033760  Integrin beta N-terminal
 IPR036116  Fibronectin type III superfamily
 IPR036349  Integrin beta tail domain superfamily
 IPR036364  SEA domain superfamily
 IPR036465  von Willebrand factor A-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006914 autophagy IMP
 biological_processGO:0007154 cell communication IEA
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007160 cell-matrix adhesion IEA
 biological_processGO:0007229 integrin-mediated signaling pathway IEA
 biological_processGO:0009611 response to wounding IDA
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0031581 hemidesmosome assembly IEA
 biological_processGO:0035878 nail development IMP
 biological_processGO:0043588 skin development IMP
 biological_processGO:0048333 mesodermal cell differentiation IEP
 biological_processGO:0048565 digestive tract development IMP
 biological_processGO:0048870 cell motility IEA
 biological_processGO:0072001 renal system development IMP
 biological_processGO:0097186 amelogenesis IMP
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0008305 integrin complex IEA
 cellular_componentGO:0009986 cell surface IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030056 hemidesmosome IEA
 cellular_componentGO:0031252 cell leading edge IDA
 cellular_componentGO:0043235 receptor complex IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0001664 G-protein coupled receptor binding IPI
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0031994 insulin-like growth factor I binding IDA
 molecular_functionGO:0038132 neuregulin binding IDA


Pathways (from Reactome)
Pathway description
Assembly of collagen fibrils and other multimeric structures
Laminin interactions
Syndecan interactions
Type I hemidesmosome assembly


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000070 Ureterocele 
Show

 HP:0000075 Renal duplication 
Show

 HP:0000096 Glomerulosclerosis 
Show

 HP:0000110 Renal dysplasia 
Show

 HP:0000119 Genitourinary abnormality "The presence of any abnormality of the genitourinary system." [HPO:curators]
Show

 HP:0000126 Hydronephrosis 
Show

 HP:0000656 Ectropion "An abnormal turning outward of the lower eyelid." [HPO:sdoelken]
Show

 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
Show

 HP:0000670 Carious teeth 
Show

 HP:0000790 Hematuria "The presence of blood in the urine. Hematuria may be gross hematuria (visible to the naked eye) or microscopic hematuria (detected by dipstick or microscopic examination of the urine)." [HPO:curators]
Show

 HP:0000962 Hyperkeratosis "Hyperkeratosis is thickening of the outer layer of the skin, the stratum corneum, which is composed of large, polyhedral, plate-like envelopes filled with keratin which are the dead cells that have migrated up from the stratum granulosum." [HPO:curators]
Show

 HP:0000982 Palmoplantar keratoderma 
Show

 HP:0001000 Abnormality of skin pigmentation 
Show

 HP:0001030 Fragile skin 
Show

 HP:0001056 Milia 
Show

 HP:0001057 Aplasia cutis congenita "A developmental defect resulting in the congenital absence of skin in multiple or solitary non-inflammatory, well-demarcated, oval or circular ulcers with a diameter of about 1 to 2 cm. Aplasia cutis congenita most commonly occurs on the scalp, but may present in the face, trunk, or limbs." [HPO:curators]
Show

 HP:0001059 Pterygia "Pterygia are winglike triangular membranes occurring in the neck, eyes, knees, elbows, ankles or digits." [HPO:curators]
Show

 HP:0001060 Axillary pterygia 
Show

 HP:0001075 Atrophic scars 
Show

 HP:0001376 Decreased mobility of joints 
Show

 HP:0001425 Heterogeneous 
Show

 HP:0001508 Failure to thrive 
Show

 HP:0001510 Growth retardation 
Show

 HP:0001522 Death in infancy 
Show

 HP:0001561 Polyhydramnios 
Show

 HP:0001581 Recurrent skin infections "Infections of the skin that happen multiple times." [HPO:curators]
Show

 HP:0001622 Premature birth 
Show

 HP:0001798 Anonychia "Total absence of nails." [HPO:curators]
Show

 HP:0001808 Fragile nails 
Show

 HP:0001903 Anemia 
Show

 HP:0001944 Dehydration 
Show

 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
Show

 HP:0002017 Nausea and vomiting 
Show

 HP:0002032 Esophageal atresia "A developmental defect resulting in complete obliteration of the lumen of the esophagus such that the esophagus ends in a blind pouch rather than connecting to the stomach." [HPO:curators]
Show

 HP:0002041 Intractable diarrhea 
Show

 HP:0002164 Nail dysplasia 
Show

 HP:0002231 Sparse body hair "Sparseness of the body hair." [HPO:probinson]
Show

 HP:0002577 Abnormality of the stomach "An abnormality of the stomach, i.e., the hollow, muscular organ of the gastrointestinal tract between the esophagus and the small intestine." [HPO:curators]
Show

 HP:0002804 Arthrogryposis multiplex congenita 
Show

 HP:0003270 Abdominal distention "Enlargement or distention of the abdomen, which can be a secondary feature associated with a number of conditions such as bowel obstruction." [HPO:curators]
Show

 HP:0003341 Skin cleavage in the lamina lucida 
Show

 HP:0003577 Onset at birth 
Show

 HP:0004399 Congenital pyloric atresia 
Show

 HP:0004552 scarring alopecia of scalp 
Show

 HP:0005984 Elevated maternal serum alpha-fetoprotein "An elevation of alpha-feto protein in the maternal serum." [HPO:curators]
Show

 HP:0006089 Palmar hyperhidrosis 
Show

 HP:0006297 Hypoplastic dental enamel 
Show

 HP:0007446 Epidermolysis bullosa involving hands and feet only 
Show

 HP:0007556 Plantar hyperkeratosis "`Hyperkeratosis` (HP:0000962) affecting the sole of the foot." [HPO:probinson]
Show

 HP:0008404 Nail dystrophy, variable 
Show

 HP:0010477 Aplasia of the bladder "Absence of the urinary bladder." [HPO:curators]
Show

 HP:0011100 Intestinal atresia "An abnormal closure, or `atresia` (PATO:0001819) of the tubular structure of the `intestine` (FMA:7199)." [HPO:probinson]
Show

 HP:0012227 Urethral stricture "Narrowing of the urethra associated with inflammation or scar tissue." [HPO:probinson]
Show

 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
Show

 HP:0100577 Urinary bladder inflammation "`Inflammation`(MPATH:212) of the `urinary bladder` (FMA:15900)." [HPO:probinson]
Show

 HP:0100806 Sepsis 
Show

 HP:0200041 skin erosion "A discontinuity of the skin exhibiting incomplete loss of the epidermis, a lesion that is moist, circumscribed, and usually depressed." [HPO:SKOEHLER]
Show

 HP:0200097 Oral mucusa blisters 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000186847 KRT14 / P02533 / keratin 14  / complex / reaction
 ENSG00000058085 LAMC2 / Q13753 / laminin subunit gamma 2  / complex / reaction
 ENSG00000065618 Q9UMD9 / COL17A1 / collagen type XVII alpha 1 chain  / complex / reaction
 ENSG00000172037 LAMB2 / P55268 / laminin subunit beta 2  / complex / reaction
 ENSG00000135862 LAMC1 / P11047 / laminin subunit gamma 1  / reaction / complex
 ENSG00000178209 PLEC / Q15149 / plectin  / reaction / complex
 ENSG00000091136 LAMB1 / P07942 / laminin subunit beta 1  / complex / reaction
 ENSG00000177697 CD151 / P48509 / CD151 molecule (Raph blood group)  / reaction / complex
 ENSG00000091409 ITGA6 / P23229 / integrin subunit alpha 6  / complex
 ENSG00000196878 LAMB3 / Q13751 / laminin subunit beta 3  / complex / reaction
 ENSG00000151914 DST / Q03001 / dystonin  / complex / reaction
 ENSG00000053747 LAMA3 / Q16787 / laminin subunit alpha 3  / reaction / complex
 ENSG00000130702 LAMA5 / O15230 / laminin subunit alpha 5  / reaction / complex
 ENSG00000186081 KRT5 / P13647 / keratin 5  / complex / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr