ENSG00000065618


Homo sapiens

Features
Gene ID: ENSG00000065618
  
Biological name :COL17A1
  
Synonyms : COL17A1 / collagen type XVII alpha 1 chain / Q9UMD9
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: -1
Band: q25.1
Gene start: 104031286
Gene end: 104086002
  
Corresponding Affymetrix probe sets: 204636_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000376905
Ensembl peptide - ENSP00000388832
Ensembl peptide - ENSP00000340937
Ensembl peptide - ENSP00000358748
NCBI entrez gene - 1308     See in Manteia.
OMIM - 113811
RefSeq - NM_000494
RefSeq Peptide - NP_000485
swissprot - A2A2Y8
swissprot - H0Y420
swissprot - Q9UMD9
Ensembl - ENSG00000065618
  
Related genetic diseases (OMIM): 122400 - Epithelial recurrent erosion dystrophy, 122400
  226650 - Epidermolysis bullosa, junctional, localisata variant, 226650
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col17a1aENSDARG00000069415Danio rerio
 col17a1bENSDARG00000079011Danio rerio
 COL17A1ENSGALG00000029617Gallus gallus
 Q07563ENSMUSG00000025064Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q2UY09 / COL28A1 / collagen type XXVIII alpha 1 chainENSG0000021501820
COL6A1 / P12109 / collagen type VI alpha 1 chainENSG0000014215616
COL6A2 / P12110 / collagen type VI alpha 2 chainENSG0000014217314
COLQ / Q9Y215 / collagen like tail subunit of asymmetric acetylcholinesteraseENSG0000020656110
Q5KU26 / COLEC12 / collectin subfamily member 12ENSG000001582709
Q6AZY7 / SCARA3 / scavenger receptor class A member 3ENSG000001680778


Protein motifs (from Interpro)
Interpro ID Name
 IPR008160  Collagen triple helix repeat
 IPR016133  Insect cysteine-rich antifreeze protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007160 cell-matrix adhesion TAS
 biological_processGO:0008544 epidermis development TAS
 biological_processGO:0031581 hemidesmosome assembly IDA
 biological_processGO:0050776 regulation of immune response TAS
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005604 basement membrane IEA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0005911 cell-cell junction TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030056 hemidesmosome IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell
Assembly of collagen fibrils and other multimeric structures
Type I hemidesmosome assembly
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000670 Carious teeth 
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 HP:0000982 Palmoplantar keratoderma 
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 HP:0001000 Abnormality of skin pigmentation 
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 HP:0001056 Milia 
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 HP:0001057 Aplasia cutis congenita "A developmental defect resulting in the congenital absence of skin in multiple or solitary non-inflammatory, well-demarcated, oval or circular ulcers with a diameter of about 1 to 2 cm. Aplasia cutis congenita most commonly occurs on the scalp, but may present in the face, trunk, or limbs." [HPO:curators]
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 HP:0001075 Atrophic scars 
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 HP:0001425 Heterogeneous 
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 HP:0001510 Growth retardation 
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 HP:0001798 Anonychia "Total absence of nails." [HPO:curators]
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 HP:0001808 Fragile nails 
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 HP:0001903 Anemia 
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 HP:0002164 Nail dysplasia 
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 HP:0002231 Sparse body hair "Sparseness of the body hair." [HPO:probinson]
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 HP:0004552 scarring alopecia of scalp 
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 HP:0006089 Palmar hyperhidrosis 
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 HP:0006297 Hypoplastic dental enamel 
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 HP:0007410 Palmoplantar hyperhidrosis 
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 HP:0007455 Adermatoglyphia 
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 HP:0007556 Plantar hyperkeratosis "`Hyperkeratosis` (HP:0000962) affecting the sole of the foot." [HPO:probinson]
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 HP:0008066 Abnormal blistering of the skin 
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 HP:0008404 Nail dystrophy, variable 
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 HP:0009926 Increased tear production "Abnormally in creased lacrimation." [HPO:curators]
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 HP:0012531 Pain "An unpleasant sensory and emotional experience associated with actual or potential tissue damage, or described in terms of such damage." [ORCID:0000-0001-5208-3432]
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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 HP:0200020 Corneal erosions "Erosions or Abbrasions of the cornea s outermost layer of epithelial cells." [HPO:sdoelken]
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 HP:0200097 Oral mucusa blisters 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000186847 KRT14 / P02533 / keratin 14  / reaction / complex
 ENSG00000132470 ITGB4 / P16144 / integrin subunit beta 4  / reaction / complex
 ENSG00000186081 KRT5 / P13647 / keratin 5  / reaction / complex
 ENSG00000091409 ITGA6 / P23229 / integrin subunit alpha 6  / complex / reaction
 ENSG00000058085 LAMC2 / Q13753 / laminin subunit gamma 2  / complex / reaction
 ENSG00000053747 LAMA3 / Q16787 / laminin subunit alpha 3  / reaction / complex
 ENSG00000178209 PLEC / Q15149 / plectin  / reaction / complex
 ENSG00000196878 LAMB3 / Q13751 / laminin subunit beta 3  / complex / reaction
 ENSG00000177697 CD151 / P48509 / CD151 molecule (Raph blood group)  / complex / reaction






 

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