ENSG00000206561


Homo sapiens

Features
Gene ID: ENSG00000206561
  
Biological name :COLQ
  
Synonyms : collagen like tail subunit of asymmetric acetylcholinesterase / COLQ / Q9Y215
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: p25.1
Gene start: 15450133
Gene end: 15521751
  
Corresponding Affymetrix probe sets: 206073_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000373291
Ensembl peptide - ENSP00000373298
Ensembl peptide - ENSP00000474271
Ensembl peptide - ENSP00000474936
Ensembl peptide - ENSP00000373296
NCBI entrez gene - 8292     See in Manteia.
OMIM - 603033
RefSeq - NM_005677
RefSeq - NM_080538
RefSeq - NM_080539
RefSeq Peptide - NP_005668
RefSeq Peptide - NP_536799
RefSeq Peptide - NP_536800
swissprot - S4R408
swissprot - A0A0C4DGS2
swissprot - Q9Y215
Ensembl - ENSG00000206561
  
Related genetic diseases (OMIM): 603034 - Myasthenic syndrome, congenital, 5, 603034
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 colqENSDARG00000019692Danio rerio
 COLQENSGALG00000011202Gallus gallus
 ColqENSMUSG00000057606Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9UMD9 / COL17A1 / collagen type XVII alpha 1 chainENSG0000006561831
Q2UY09 / COL28A1 / collagen type XXVIII alpha 1 chainENSG0000021501831
COL6A1 / P12109 / collagen type VI alpha 1 chainENSG0000014215629
COL6A2 / P12110 / collagen type VI alpha 2 chainENSG0000014217328
Q5KU26 / COLEC12 / collectin subfamily member 12ENSG0000015827020
Q6AZY7 / SCARA3 / scavenger receptor class A member 3ENSG0000016807715


Protein motifs (from Interpro)
Interpro ID Name
 IPR008160  Collagen triple helix repeat
 IPR011936  Myxococcus cysteine-rich repeat
 IPR016133  Insect cysteine-rich antifreeze protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001507 acetylcholine catabolic process in synaptic cleft TAS
 biological_processGO:0008582 regulation of synaptic growth at neuromuscular junction IEA
 biological_processGO:0042135 neurotransmitter catabolic process IEA
 biological_processGO:0071340 skeletal muscle acetylcholine-gated channel clustering IEA
 biological_processGO:0090150 establishment of protein localization to membrane IEA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005605 basal lamina TAS
 cellular_componentGO:0005615 extracellular space TAS
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0031594 neuromuscular junction IEA
 cellular_componentGO:0043083 synaptic cleft IEA
 cellular_componentGO:0045202 synapse IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000597 Ophthalmoparesis "Ophthalmoplegia is a paralysis or weakness of one or more of the muscles that control eye movement." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001612 Weak cry 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002093 Respiratory insufficiency 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002715 Immunological abnormality 
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 HP:0002747 Respiratory insufficiency due to muscle weakness 
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 HP:0003199 Decreased muscle mass 
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 HP:0003307 Hyperlordosis 
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 HP:0003324 Generalized muscle weakness "Generalized weakness or decreased strength of the muscles." [HPO:curators]
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 HP:0003388 Easy fatigability 
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 HP:0003403 EMG shows decremental response of compound muscle action potential (CMAP) to repetitive nerve stimulation 
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 HP:0003436 Prolonged miniature endplate currents (MEPC) 
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 HP:0003443 Muscle biopsy shows decreased size of nerve terminals 
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 HP:0003473 Mild-moderate fatigable weakness of limb muscles 
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 HP:0003554 Type 2 muscle fiber atrophy "Atrophy (wasting) affecting primary type 2 muscle fibers. This feature in general can only be observed on muscle biopsy." [HPO:curators]
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 HP:0003593 Early onset 
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 HP:0003690 Limb muscle weakness "Weakness of the muscles of the arms and legs." [HPO:curators]
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 HP:0008872 Feeding problems in infancy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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