ENSG00000215018


Homo sapiens

Features
Gene ID: ENSG00000215018
  
Biological name :COL28A1
  
Synonyms : COL28A1 / collagen type XXVIII alpha 1 chain / Q2UY09
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: -1
Band: p21.3
Gene start: 7356203
Gene end: 7535853
  
Corresponding Affymetrix probe sets: 239921_at (Human Genome U133 Plus 2.0 Array)   242345_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000413093
Ensembl peptide - ENSP00000391380
Ensembl peptide - ENSP00000408401
Ensembl peptide - ENSP00000410557
Ensembl peptide - ENSP00000382356
NCBI entrez gene - 340267     See in Manteia.
OMIM - 609996
RefSeq - XM_017012132
RefSeq - XM_011515360
RefSeq - XM_011515362
RefSeq - XM_011515363
RefSeq - XM_011515364
RefSeq - XM_011515365
RefSeq - XM_017012131
RefSeq - NM_001037763
RefSeq - XM_011515358
RefSeq - XM_011515359
RefSeq Peptide - NP_001032852
swissprot - A0A0C4DG72
swissprot - H7BZU0
swissprot - H7C3P2
swissprot - A0A0C4DG66
swissprot - Q2UY09
Ensembl - ENSG00000215018
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col28a1aENSDARG00000077084Danio rerio
 col28a1bENSDARG00000087087Danio rerio
 COL28A1ENSGALG00000010259Gallus gallus
 Q2UY11ENSMUSG00000068794Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9UMD9 / COL17A1 / collagen type XVII alpha 1 chainENSG0000006561826
COL6A2 / P12110 / collagen type VI alpha 2 chainENSG0000014217326
COL6A1 / P12109 / collagen type VI alpha 1 chainENSG0000014215624
COLQ / Q9Y215 / collagen like tail subunit of asymmetric acetylcholinesteraseENSG0000020656112
Q5KU26 / COLEC12 / collectin subfamily member 12ENSG0000015827011
Q6AZY7 / SCARA3 / scavenger receptor class A member 3ENSG000001680779


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR002223  Pancreatic trypsin inhibitor Kunitz domain
 IPR008160  Collagen triple helix repeat
 IPR016133  Insect cysteine-rich antifreeze protein
 IPR020901  Proteinase inhibitor I2, Kunitz, conserved site
 IPR036465  von Willebrand factor A-like domain superfamily
 IPR036880  Pancreatic trypsin inhibitor Kunitz domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0010466 negative regulation of peptidase activity IEA
 biological_processGO:0010951 negative regulation of endopeptidase activity IEA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005604 basement membrane IEA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0031012 extracellular matrix IDA
 molecular_functionGO:0004867 serine-type endopeptidase inhibitor activity IEA
 molecular_functionGO:0030414 peptidase inhibitor activity IEA


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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