ENSMUSG00000068794


Mus musculus

Features
Gene ID: ENSMUSG00000068794
  
Biological name :Col28a1
  
Synonyms : Col28a1 / Collagen alpha-1(XXVIII) chain / Q2UY11
  
Possible biological names infered from orthology : collagen type XXVIII alpha 1 chain / Q2UY09
  
Species: Mus musculus
  
Chr. number: 6
Strand: -1
Band: A1
Gene start: 7997808
Gene end: 8192617
  
Corresponding Affymetrix probe sets: 10543082 (MoGene1.0st)   
  
Cross references: Ensembl peptide - ENSMUSP00000111199
Ensembl peptide - ENSMUSP00000150110
NCBI entrez gene - 213945     See in Manteia.
MGI - MGI:2685312
RefSeq - XM_017321503
RefSeq - NM_001037865
RefSeq - XM_006505032
RefSeq - XM_006505033
RefSeq - XM_017321502
RefSeq - XM_006505031
RefSeq Peptide - NP_001032954
swissprot - Q2UY11
swissprot - A0A1L1SSY2
Ensembl - ENSMUSG00000068794
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col28a1aENSDARG00000077084Danio rerio
 col28a1bENSDARG00000087087Danio rerio
 COL28A1ENSGALG00000010259Gallus gallus
 Q2UY09ENSG00000215018Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Col6a2 / Q02788 / Mus musculus collagen, type VI, alpha 2 (Col6a2), transcript variant 2, mRNA. / P12110* / collagen type VI alpha 2 chain*ENSMUSG0000002024125
Q07563 / Col17a1 / Collagen alpha-1(XVII) chain 120 kDa linear IgA disease antigen homolog / Q9UMD9* / collagen type XVII alpha 1 chain*ENSMUSG0000002506424
Col6a1 / Q04857 / Collagen alpha-1(VI) chain / P12109* / collagen type VI alpha 1 chain*ENSMUSG0000000111923
Colq / O35348 / Acetylcholinesterase collagenic tail peptide / Q9Y215* / collagen like tail subunit of asymmetric acetylcholinesterase*ENSMUSG0000005760612
Q8K4Q8 / Colec12 / Collectin-12 / Q5KU26* / collectin subfamily member 12*ENSMUSG0000003610311
Q8C850 / Scara3 / Scavenger receptor class A member 3 / Q6AZY7*ENSMUSG000000344639


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR002223  Pancreatic trypsin inhibitor Kunitz domain
 IPR008160  Collagen triple helix repeat
 IPR016133  Insect cysteine-rich antifreeze protein
 IPR020901  Proteinase inhibitor I2, Kunitz, conserved site
 IPR036465  von Willebrand factor A-like domain superfamily
 IPR036880  Pancreatic trypsin inhibitor Kunitz domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0008150 biological_process ND
 biological_processGO:0010466 negative regulation of peptidase activity IEA
 biological_processGO:0010951 negative regulation of endopeptidase activity IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005604 basement membrane IDA
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0004867 serine-type endopeptidase inhibitor activity IEA
 molecular_functionGO:0030414 peptidase inhibitor activity IEA


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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