ENSDARG00000087087


Danio rerio

Features
Gene ID: ENSDARG00000087087
  
Biological name :col28a1b
  
Synonyms : col28a1b / collagen, type XXVIII, alpha 1b
  
Possible biological names infered from orthology : COL28A1 / Collagen alpha-1(XXVIII) chain / collagen type XXVIII alpha 1 chain / Q2UY09 / Q2UY11
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 47308856
Gene end: 47344147
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000130072
NCBI entrez gene - 100332225     See in Manteia.
RefSeq - NM_001302249
RefSeq Peptide - NP_001289178
swissprot - A0A0G2KCR2
ZFIN ID - ZDB-GENE-160503-1
Ensembl - ENSDARG00000087087
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COL28A1ENSGALG00000010259Gallus gallus
 Q2UY09ENSG00000215018Homo sapiens
 Q2UY11ENSMUSG00000068794Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
col28a1a / collagen, type XXVIII, alpha 1a / Q2UY11* / Q2UY09* / COL28A1* / Collagen alpha-1(XXVIII) chain * / collagen type XXVIII alpha 1 chain*ENSDARG0000007708456
col28a2a / collagen, type XXVIII, alpha 2aENSDARG0000007632151
col28a2b / collagen, type XXVIII, alpha 2bENSDARG0000010078149
col6a2 / collagen, type VI, alpha 2 / P12110* / Q02788* / collagen type VI alpha 2 chain* / Mus musculus collagen, type VI, alpha 2 (Col6a2), transcript variant 2, mRNA.*ENSDARG0000006143625
col6a1 / collagen, type VI, alpha 1 / Q04857* / P12109* / Collagen alpha-1(VI) chain * / collagen type VI alpha 1 chain*ENSDARG0000007490824
col17a1b / collagen, type XVII, alpha 1b / Q9UMD9* / Q07563* / COL17A1* / collagen type XVII alpha 1 chain* / Collagen alpha-1(XVII) chain 120 kDa linear IgA disease antigen homolog*ENSDARG0000007901124
col17a1a / collagen, type XVII, alpha 1a / Q9UMD9* / Q07563* / COL17A1* / collagen type XVII alpha 1 chain* / Collagen alpha-1(XVII) chain 120 kDa linear IgA disease antigen homolog*ENSDARG0000006941521
wu:fc38h03ENSDARG0000007421611
colq / collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase / O35348* / Q9Y215* / Acetylcholinesterase collagenic tail peptide * / collagen like tail ...ENSDARG0000001969211
A5PMY6 / colec12 / collectin sub-family member 12 / Q8K4Q8* / Q5KU26* / Collectin-12 * / collectin subfamily member 12*ENSDARG0000006114010
scara3 / scavenger receptor class A, member 3 / Q6AZY7*ENSDARG000000080608


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR002223  Pancreatic trypsin inhibitor Kunitz domain
 IPR008160  Collagen triple helix repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010951 negative regulation of endopeptidase activity IEA
 molecular_functionGO:0004867 serine-type endopeptidase inhibitor activity IEA


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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