ENSDARG00000061140


Danio rerio

Features
Gene ID: ENSDARG00000061140
  
Biological name :colec12
  
Synonyms : A5PMY6 / colec12 / collectin sub-family member 12
  
Possible biological names infered from orthology : Collectin-12 / collectin subfamily member 12 / Q5KU26 / Q8K4Q8
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 31382590
Gene end: 31435158
  
Corresponding Affymetrix probe sets: Dr.10475.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000081297
NCBI entrez gene - 558942     See in Manteia.
RefSeq - NM_001122840
RefSeq Peptide - NP_001116312
swissprot - A5PMY6
ZFIN ID - ZDB-GENE-030131-9807
Ensembl - ENSDARG00000061140
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COLEC12ENSGALG00000014910Gallus gallus
 Q5KU26ENSG00000158270Homo sapiens
 Q8K4Q8ENSMUSG00000036103Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
scara3 / scavenger receptor class A, member 3 / Q6AZY7*ENSDARG0000000806025
col6a1 / collagen, type VI, alpha 1 / Q04857* / P12109* / Collagen alpha-1(VI) chain * / collagen type VI alpha 1 chain*ENSDARG0000007490818
col28a2a / collagen, type XXVIII, alpha 2aENSDARG0000007632117
col17a1a / collagen, type XVII, alpha 1a / Q9UMD9* / Q07563* / COL17A1* / collagen type XVII alpha 1 chain* / Collagen alpha-1(XVII) chain 120 kDa linear IgA disease antigen homolog*ENSDARG0000006941516
col17a1b / collagen, type XVII, alpha 1b / Q9UMD9* / Q07563* / COL17A1* / collagen type XVII alpha 1 chain* / Collagen alpha-1(XVII) chain 120 kDa linear IgA disease antigen homolog*ENSDARG0000007901116
col28a1a / collagen, type XXVIII, alpha 1a / Q2UY11* / Q2UY09* / COL28A1* / Collagen alpha-1(XXVIII) chain * / collagen type XXVIII alpha 1 chain*ENSDARG0000007708415
col6a2 / collagen, type VI, alpha 2 / P12110* / Q02788* / collagen type VI alpha 2 chain* / Mus musculus collagen, type VI, alpha 2 (Col6a2), transcript variant 2, mRNA.*ENSDARG0000006143615
col28a2b / collagen, type XXVIII, alpha 2bENSDARG0000010078115
col28a1b / collagen, type XXVIII, alpha 1b / Q2UY09* / COL28A1* / collagen type XXVIII alpha 1 chain*ENSDARG0000008708715
wu:fc38h03ENSDARG0000007421613
colq / collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase / O35348* / Q9Y215* / Acetylcholinesterase collagenic tail peptide * / collagen like tail ...ENSDARG0000001969212


Protein motifs (from Interpro)
Interpro ID Name
 IPR001304  C-type lectin-like
 IPR008160  Collagen triple helix repeat
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold
 IPR018378  C-type lectin, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001570 vasculogenesis IMP
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0030246 carbohydrate binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Scavenging by Class A Receptors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000014 dorsal aorta dorsal aorta hypoplastic , abnormal
dorsal aorta aplastic , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000114 heart heart decreased functionality , abnormal
Show

 ZFA:0001094 whole organism whole organism anterior-posterior axis decreased length , abnormal
Show

 ZFA:0001115 trunk trunk morphology , abnormal
Show

 ZFA:0001285 intersegmental vessel intersegmental vessel aplastic , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000061140 A5PMY6 / colec12 / collectin sub-family member 12 / Q8K4Q8* / Q5KU26* / Collectin-12 * / collectin subfamily member 12*  / complex






 

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