ENSDARG00000061436
Danio rerio | |
Features
| Gene ID: | ENSDARG00000061436 | | | | | Biological name : | col6a2 | | | | | Synonyms : | col6a2 / collagen, type VI, alpha 2 | | | | | Possible biological names infered from orthology : | collagen type VI alpha 2 chain / Mus musculus collagen, type VI, alpha 2 (Col6a2), transcript variant 2, mRNA. / P12110 / Q02788 | | | | | Species: | Danio rerio | | | | | Chr. number: | 11 | | Strand: | -1 | | Band: | | | Gene start: | 33921358 | | Gene end: | 33960318 | | | | | Corresponding Affymetrix probe sets: | | | | | | Cross references: | Ensembl peptide - ENSDARP00000082031
NCBI entrez gene - 567771
See in Manteia.
swissprot - E7FCV8
ZFIN ID - ZDB-GENE-070501-7
Ensembl - ENSDARG00000061436
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See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed
Ortholog prediction (from Ensembl)
Paralog prediction (from Ensembl)
| col6a1 / collagen, type VI, alpha 1 / Q04857* / P12109* / Collagen alpha-1(VI) chain * / collagen type VI alpha 1 chain* | ENSDARG00000074908 | 34 | | col28a1b / collagen, type XXVIII, alpha 1b / Q2UY09* / COL28A1* / collagen type XXVIII alpha 1 chain* | ENSDARG00000087087 | 28 | | col28a1a / collagen, type XXVIII, alpha 1a / Q2UY11* / Q2UY09* / COL28A1* / Collagen alpha-1(XXVIII) chain * / collagen type XXVIII alpha 1 chain* | ENSDARG00000077084 | 28 | | col28a2a / collagen, type XXVIII, alpha 2a | ENSDARG00000076321 | 27 | | col28a2b / collagen, type XXVIII, alpha 2b | ENSDARG00000100781 | 26 | | col17a1b / collagen, type XVII, alpha 1b / Q9UMD9* / Q07563* / COL17A1* / collagen type XVII alpha 1 chain* / Collagen alpha-1(XVII) chain 120 kDa linear IgA disease antigen homolog* | ENSDARG00000079011 | 19 | | col17a1a / collagen, type XVII, alpha 1a / Q9UMD9* / Q07563* / COL17A1* / collagen type XVII alpha 1 chain* / Collagen alpha-1(XVII) chain 120 kDa linear IgA disease antigen homolog* | ENSDARG00000069415 | 18 | | colq / collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase / O35348* / Q9Y215* / Acetylcholinesterase collagenic tail peptide * / collagen like tail ... | ENSDARG00000019692 | 12 | | wu:fc38h03 | ENSDARG00000074216 | 11 | | A5PMY6 / colec12 / collectin sub-family member 12 / Q8K4Q8* / Q5KU26* / Collectin-12 * / collectin subfamily member 12* | ENSDARG00000061140 | 11 | | scara3 / scavenger receptor class A, member 3 / Q6AZY7* | ENSDARG00000008060 | 9 |
Protein motifs (from Interpro)
Gene Ontology (GO)
Pathways (from Reactome)
Phenotype (from MGI, Zfin or HPO)
| ZFA:0000107 | eye | eye decreased size , abnormal |
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| | ZFA:0000155 | somite | somite myofibril loose , abnormal |
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| | ZFA:0000368 | integument | integument vertical myoseptum morphology , abnormal |
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| | ZFA:0000610 | vertical myoseptum | vertical myoseptum U-shaped , abnormal |
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| | ZFA:0001056 | myotome | myotome compartment boundary morphology , abnormal |
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| | ZFA:0001089 | myoseptum | myoseptum morphology , abnormal |
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| | ZFA:0001094 | whole organism | whole organism decreased length , abnormal
whole organism decreased amount , abnormal
whole organism refractivity , abnormal
whole organism decreased pigmentation , abnormal |
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| | ZFA:0001115 | trunk | trunk bent , abnormal |
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| | ZFA:0005145 | muscle | muscle mitochondrion morphology , abnormal
muscle Z disc morphology , abnormal
muscle T-tubule increased size , abnormal |
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| | ZFA:0005277 | skeletal muscle | skeletal muscle skeletal muscle myofibril disorganized , abnormal |
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| | ZFA:0009052 | motor neuron | motor neuron axon decreased length , abnormal |
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| | ZFA:0009114 | muscle cell | muscle cell nucleus increased size , abnormal
muscle cell nucleolus increased size , abnormal
muscle cell sarcoplasm undifferentiated , abnormal |
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Interacting proteins (from Reactome)
No match
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