ENSGALG00000039216


Gallus gallus

Features
Gene ID: ENSGALG00000039216
  
Biological name :COL6A2
  
Synonyms : COL6A2 / Collagen alpha-2(VI) chain / P15988
  
Possible biological names infered from orthology : collagen type VI alpha 2 chain / Mus musculus collagen, type VI, alpha 2 (Col6a2), transcript variant 2, mRNA. / P12110 / Q02788
  
Species: Gallus gallus
  
Chr. number: 7
Strand: 1
Band:
Gene start: 6764395
Gene end: 6790429
  
Corresponding Affymetrix probe sets: Gga.19820.1.S1_at (Chicken Array)   Gga.4257.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000053721
Ensembl peptide - ENSGALP00000043563
NCBI entrez gene - 396292     See in Manteia.
RefSeq - XM_015289137
RefSeq - NM_205348
RefSeq Peptide - NP_990679
swissprot - P15988
swissprot - A0A1D5PLK4
Ensembl - ENSGALG00000039216
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col6a2ENSDARG00000061436Danio rerio
 COL6A2ENSG00000142173Homo sapiens
 Col6a2ENSMUSG00000020241Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL6A1 / collagen alpha-1(VI) chain precursor / Q04857* / P12109* / Collagen alpha-1(VI) chain * / collagen type VI alpha 1 chain*ENSGALG0000000597436
ENSGALG0000001065727
COL28A1 / collagen type XXVIII alpha 1 chain / Q2UY09* / Q2UY11* / Collagen alpha-1(XXVIII) chain *ENSGALG0000001025926
COL17A1 / collagen alpha-1(XVII) chain / Q07563* / Q9UMD9* / collagen type XVII alpha 1 chain* / Collagen alpha-1(XVII) chain 120 kDa linear IgA disease antigen homolog*ENSGALG0000002961721
COLEC12 / collectin-12 / Q5KU26* / Q8K4Q8* / collectin subfamily member 12*ENSGALG0000001491012
COLQ / collagen like tail subunit of asymmetric acetylcholinesterase / O35348* / Q9Y215* / Acetylcholinesterase collagenic tail peptide *ENSGALG0000001120212
SCARA3 / scavenger receptor class A member 3 / Q6AZY7* / Q8C850*ENSGALG0000002665110


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR008160  Collagen triple helix repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0070208 protein heterotrimerization IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 cellular_componentGO:0032991 protein-containing complex IEA
 cellular_componentGO:0042383 sarcolemma IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
ECM proteoglycans
NCAM1 interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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