ENSGALG00000029617


Gallus gallus

Features
Gene ID: ENSGALG00000029617
  
Biological name :COL17A1
  
Synonyms : COL17A1 / collagen alpha-1(XVII) chain
  
Possible biological names infered from orthology : Collagen alpha-1(XVII) chain 120 kDa linear IgA disease antigen homolog / collagen type XVII alpha 1 chain / Q07563 / Q9UMD9
  
Species: Gallus gallus
  
Chr. number: 6
Strand: -1
Band:
Gene start: 24133416
Gene end: 24173373
  
Corresponding Affymetrix probe sets: Gga.866.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000044395
Ensembl peptide - ENSGALP00000064404
Ensembl peptide - ENSGALP00000050588
NCBI entrez gene - 396503     See in Manteia.
RefSeq - NM_001305202
RefSeq Peptide - NP_001292131
swissprot - A0A1L1RZW7
swissprot - A0A1D5PCU7
swissprot - A0A1D5NVM0
Ensembl - ENSGALG00000029617
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col17a1aENSDARG00000069415Danio rerio
 col17a1bENSDARG00000079011Danio rerio
 Q9UMD9ENSG00000065618Homo sapiens
 Q07563ENSMUSG00000025064Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ENSGALG0000001065719
COL28A1 / collagen type XXVIII alpha 1 chain / Q2UY09* / Q2UY11* / Collagen alpha-1(XXVIII) chain *ENSGALG0000001025918
COL6A1 / collagen alpha-1(VI) chain precursor / Q04857* / P12109* / Collagen alpha-1(VI) chain * / collagen type VI alpha 1 chain*ENSGALG0000000597415
P15988 / COL6A2 / Collagen alpha-2(VI) chain / Q02788* / P12110* / collagen type VI alpha 2 chain* / Mus musculus collagen, type VI, alpha 2 (Col6a2), transcript variant 2, mRNA.*ENSGALG0000003921614
COLEC12 / collectin-12 / Q5KU26* / Q8K4Q8* / collectin subfamily member 12*ENSGALG000000149109
SCARA3 / scavenger receptor class A member 3 / Q6AZY7* / Q8C850*ENSGALG000000266518
COLQ / collagen like tail subunit of asymmetric acetylcholinesterase / O35348* / Q9Y215* / Acetylcholinesterase collagenic tail peptide *ENSGALG000000112028


Protein motifs (from Interpro)
Interpro ID Name
 IPR008160  Collagen triple helix repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0031581 hemidesmosome assembly IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030056 hemidesmosome IEA


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Type I hemidesmosome assembly
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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