ENSGALG00000010259


Gallus gallus

Features
Gene ID: ENSGALG00000010259
  
Biological name :COL28A1
  
Synonyms : COL28A1 / collagen type XXVIII alpha 1 chain
  
Possible biological names infered from orthology : Collagen alpha-1(XXVIII) chain / Q2UY09 / Q2UY11
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 24735576
Gene end: 24796883
  
Corresponding Affymetrix probe sets: GgaAffx.6470.1.S1_at (Chicken Array)   GgaAffx.6616.1.S1_at (Chicken Array)   GgaAffx.6730.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000017302
NCBI entrez gene - 420576     See in Manteia.
RefSeq - XM_015281906
swissprot - E1C4H5
Ensembl - ENSGALG00000010259
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col28a1aENSDARG00000077084Danio rerio
 col28a1bENSDARG00000087087Danio rerio
 Q2UY09ENSG00000215018Homo sapiens
 Q2UY11ENSMUSG00000068794Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ENSGALG0000001065744
COL17A1 / collagen alpha-1(XVII) chain / Q07563* / Q9UMD9* / collagen type XVII alpha 1 chain* / Collagen alpha-1(XVII) chain 120 kDa linear IgA disease antigen homolog*ENSGALG0000002961724
P15988 / COL6A2 / Collagen alpha-2(VI) chain / Q02788* / P12110* / collagen type VI alpha 2 chain* / Mus musculus collagen, type VI, alpha 2 (Col6a2), transcript variant 2, mRNA.*ENSGALG0000003921624
COL6A1 / collagen alpha-1(VI) chain precursor / Q04857* / P12109* / Collagen alpha-1(VI) chain * / collagen type VI alpha 1 chain*ENSGALG0000000597422
COLEC12 / collectin-12 / Q5KU26* / Q8K4Q8* / collectin subfamily member 12*ENSGALG0000001491011
COLQ / collagen like tail subunit of asymmetric acetylcholinesterase / O35348* / Q9Y215* / Acetylcholinesterase collagenic tail peptide *ENSGALG000000112029
SCARA3 / scavenger receptor class A member 3 / Q6AZY7* / Q8C850*ENSGALG000000266518


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR002223  Pancreatic trypsin inhibitor Kunitz domain
 IPR008160  Collagen triple helix repeat
 IPR020901  Proteinase inhibitor I2, Kunitz, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010951 negative regulation of endopeptidase activity IEA
 cellular_componentGO:0005604 basement membrane IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0004867 serine-type endopeptidase inhibitor activity IEA


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr