ENSGALG00000005974


Gallus gallus

Features
Gene ID: ENSGALG00000005974
  
Biological name :COL6A1
  
Synonyms : COL6A1 / collagen alpha-1(VI) chain precursor
  
Possible biological names infered from orthology : Collagen alpha-1(VI) chain / collagen type VI alpha 1 chain / P12109 / Q04857
  
Species: Gallus gallus
  
Chr. number: 7
Strand: 1
Band:
Gene start: 6723053
Gene end: 6744124
  
Corresponding Affymetrix probe sets: Gga.3110.1.S1_x_at (Chicken Array)   GgaAffx.21771.1.S1_at (Chicken Array)   GgaAffx.2737.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000057372
Ensembl peptide - ENSGALP00000038878
NCBI entrez gene - 396000     See in Manteia.
RefSeq - XM_015289126
RefSeq - NM_205107
RefSeq Peptide - NP_990438
swissprot - A0A1D5PWN6
swissprot - F1NFE0
Ensembl - ENSGALG00000005974
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col6a1ENSDARG00000074908Danio rerio
 COL6A1ENSG00000142156Homo sapiens
 Col6a1ENSMUSG00000001119Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P15988 / COL6A2 / Collagen alpha-2(VI) chain / Q02788* / P12110* / collagen type VI alpha 2 chain* / Mus musculus collagen, type VI, alpha 2 (Col6a2), transcript variant 2, mRNA.*ENSGALG0000003921636
ENSGALG0000001065727
COL28A1 / collagen type XXVIII alpha 1 chain / Q2UY09* / Q2UY11* / Collagen alpha-1(XXVIII) chain *ENSGALG0000001025925
COL17A1 / collagen alpha-1(XVII) chain / Q07563* / Q9UMD9* / collagen type XVII alpha 1 chain* / Collagen alpha-1(XVII) chain 120 kDa linear IgA disease antigen homolog*ENSGALG0000002961722
COLEC12 / collectin-12 / Q5KU26* / Q8K4Q8* / collectin subfamily member 12*ENSGALG0000001491012
COLQ / collagen like tail subunit of asymmetric acetylcholinesterase / O35348* / Q9Y215* / Acetylcholinesterase collagenic tail peptide *ENSGALG0000001120212
SCARA3 / scavenger receptor class A member 3 / Q6AZY7* / Q8C850*ENSGALG000000266519


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR008160  Collagen triple helix repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0035987 endodermal cell differentiation IEA
 biological_processGO:0070208 protein heterotrimerization IEA
 biological_processGO:0071230 cellular response to amino acid stimulus IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 cellular_componentGO:0032991 protein-containing complex IEA
 cellular_componentGO:0042383 sarcolemma IEA
 molecular_functionGO:0048407 platelet-derived growth factor binding IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
ECM proteoglycans
NCAM1 interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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