ENSGALG00000014910


Gallus gallus

Features
Gene ID: ENSGALG00000014910
  
Biological name :COLEC12
  
Synonyms : COLEC12 / collectin-12
  
Possible biological names infered from orthology : collectin subfamily member 12 / Q5KU26 / Q8K4Q8
  
Species: Gallus gallus
  
Chr. number: 2
Strand: 1
Band:
Gene start: 102313605
Gene end: 102405919
  
Corresponding Affymetrix probe sets: Gga.10960.1.S1_at (Chicken Array)   Gga.15998.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000050496
Ensembl peptide - ENSGALP00000030293
NCBI entrez gene - 421061     See in Manteia.
RefSeq - NM_001039599
RefSeq Peptide - NP_001034688
swissprot - F1NIN5
swissprot - A0A1D5PCK7
Ensembl - ENSGALG00000014910
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 A5PMY6ENSDARG00000061140Danio rerio
 Q5KU26ENSG00000158270Homo sapiens
 Q8K4Q8ENSMUSG00000036103Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SCARA3 / scavenger receptor class A member 3 / Q6AZY7* / Q8C850*ENSGALG0000002665126
COL17A1 / collagen alpha-1(XVII) chain / Q07563* / Q9UMD9* / collagen type XVII alpha 1 chain* / Collagen alpha-1(XVII) chain 120 kDa linear IgA disease antigen homolog*ENSGALG0000002961718
ENSGALG0000001065718
COL6A1 / collagen alpha-1(VI) chain precursor / Q04857* / P12109* / Collagen alpha-1(VI) chain * / collagen type VI alpha 1 chain*ENSGALG0000000597417
COL28A1 / collagen type XXVIII alpha 1 chain / Q2UY09* / Q2UY11* / Collagen alpha-1(XXVIII) chain *ENSGALG0000001025916
P15988 / COL6A2 / Collagen alpha-2(VI) chain / Q02788* / P12110* / collagen type VI alpha 2 chain* / Mus musculus collagen, type VI, alpha 2 (Col6a2), transcript variant 2, mRNA.*ENSGALG0000003921616
COLQ / collagen like tail subunit of asymmetric acetylcholinesterase / O35348* / Q9Y215* / Acetylcholinesterase collagenic tail peptide *ENSGALG0000001120212


Protein motifs (from Interpro)
Interpro ID Name
 IPR001304  C-type lectin-like
 IPR008160  Collagen triple helix repeat
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold
 IPR018378  C-type lectin, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006910 phagocytosis, recognition IEA
 biological_processGO:0006955 immune response IEA
 biological_processGO:0034138 toll-like receptor 3 signaling pathway IEA
 biological_processGO:0060355 positive regulation of cell adhesion molecule production IEA
 biological_processGO:0071360 cellular response to exogenous dsRNA IEA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0008329 signaling pattern recognition receptor activity IEA
 molecular_functionGO:0030169 low-density lipoprotein particle binding IEA
 molecular_functionGO:0030246 carbohydrate binding IEA


Pathways (from Reactome)
Pathway description
Scavenging by Class A Receptors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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