Manteia

ENSMUSG00000020241

Mus musculus

Features

Gene ID:	ENSMUSG00000020241

Biological name :	Col6a2

Synonyms :	Col6a2 / Mus musculus collagen, type VI, alpha 2 (Col6a2), transcript variant 2, mRNA. / Q02788

Possible biological names infered from orthology :	collagen type VI alpha 2 chain / P12110

Species:	Mus musculus

Chr. number:	10
Strand:	-1
Band:	C1
Gene start:	76595762
Gene end:	76623630

Corresponding Affymetrix probe sets:	10370180 (MoGene1.0st) 1426947_x_at (Mouse Genome 430 2.0 Array) 1452250_a_at (Mouse Genome 430 2.0 Array)

Cross references:	Ensembl peptide - ENSMUSP00000001181 Ensembl peptide - ENSMUSP00000101053 NCBI entrez gene - 12834 See in Manteia. MGI - MGI:88460 RefSeq - XM_006513177 RefSeq - NM_001347207 RefSeq - NM_146007 RefSeq Peptide - NP_001334136 RefSeq Peptide - NP_666119 swissprot - Q02788 swissprot - D3Z7D5 Ensembl - ENSMUSG00000020241

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
Col6a1 / Q04857 / Collagen alpha-1(VI) chain / P12109* / collagen type VI alpha 1 chain*	ENSMUSG00000001119	35
Q2UY11 / Col28a1 / Collagen alpha-1(XXVIII) chain / Q2UY09* / collagen type XXVIII alpha 1 chain*	ENSMUSG00000068794	28
Q07563 / Col17a1 / Collagen alpha-1(XVII) chain 120 kDa linear IgA disease antigen homolog / Q9UMD9* / collagen type XVII alpha 1 chain*	ENSMUSG00000025064	19
Q8K4Q8 / Colec12 / Collectin-12 / Q5KU26* / collectin subfamily member 12*	ENSMUSG00000036103	13
Colq / O35348 / Acetylcholinesterase collagenic tail peptide / Q9Y215* / collagen like tail subunit of asymmetric acetylcholinesterase*	ENSMUSG00000057606	13
Q8C850 / Scara3 / Scavenger receptor class A member 3 / Q6AZY7*	ENSMUSG00000034463	10

Protein motifs (from Interpro)

Interpro ID	Name
IPR002035	von Willebrand factor, type A
IPR008160	Collagen triple helix repeat
IPR016133	Insect cysteine-rich antifreeze protein
IPR036465	von Willebrand factor A-like domain superfamily

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0007155	cell adhesion	IEA
biological_process	GO:0009749	response to glucose	IEA
biological_process	GO:0070208	protein heterotrimerization	IEA
cellular_component	GO:0005576	extracellular region	ISO
cellular_component	GO:0005581	collagen trimer	IEA
cellular_component	GO:0005615	extracellular space	IEA
cellular_component	GO:0016020	membrane	IEA
cellular_component	GO:0031012	extracellular matrix	IEA
cellular_component	GO:0032991	protein-containing complex	IEA
cellular_component	GO:0042383	sarcolemma	IDA

Pathways (from Reactome)

Pathway description

Collagen degradation

Phenotype (from MGI, Zfin or HPO)

ID	Phenotype	Definition	Genetic BG
MP:0001262	decreased body weight	"lower than normal average weight " [J:61295]	Show Allelic Composition: Shh^{tm1(EGFP/cre)Cjt}/Shh⁺,Sox17^tm1Ysk/Sox17⁺ Genetic Background: involves: 129S1/Sv * C57BL/6
MP:0010053	decreased grip strength	"reduced ability to grasp and hold objects, often measured as time spent hanging from an object or wire" [ISBN:0471316393 "Crawley, JN, What s Wrong with my Mouse: Behavioral Phenotyping of Transgenic and Knockout Mice"]	Show Allelic Composition: Cbln3^{tm1.1(KOMP)Vlcg}/Cbln3^{tm1.1(KOMP)Vlcg} Genetic Background: C57BL/6N-Cbln3^{tm1.1(KOMP)Vlcg}/Ucd

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr