ENSMUSG00000057606


Mus musculus

Features
Gene ID: ENSMUSG00000057606
  
Biological name :Colq
  
Synonyms : Acetylcholinesterase collagenic tail peptide / Colq / O35348
  
Possible biological names infered from orthology : collagen like tail subunit of asymmetric acetylcholinesterase / Q9Y215
  
Species: Mus musculus
  
Chr. number: 14
Strand: -1
Band: B
Gene start: 31523082
Gene end: 31591343
  
Corresponding Affymetrix probe sets: 10418729 (MoGene1.0st)   1448081_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000121065
Ensembl peptide - ENSMUSP00000107658
Ensembl peptide - ENSMUSP00000116916
NCBI entrez gene - 382864     See in Manteia.
MGI - MGI:1338761
RefSeq - XM_011245106
RefSeq - XM_006519194
RefSeq - XM_006519195
RefSeq - XM_011245104
RefSeq - XM_011245105
RefSeq - NM_009937
RefSeq - XM_006519193
RefSeq Peptide - NP_034067
swissprot - E9PVR3
swissprot - D3Z1C2
swissprot - O35348
Ensembl - ENSMUSG00000057606
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 colqENSDARG00000019692Danio rerio
 COLQENSGALG00000011202Gallus gallus
 COLQENSG00000206561Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q07563 / Col17a1 / Collagen alpha-1(XVII) chain 120 kDa linear IgA disease antigen homolog / Q9UMD9* / collagen type XVII alpha 1 chain*ENSMUSG0000002506430
Q2UY11 / Col28a1 / Collagen alpha-1(XXVIII) chain / Q2UY09* / collagen type XXVIII alpha 1 chain*ENSMUSG0000006879429
Col6a2 / Q02788 / Mus musculus collagen, type VI, alpha 2 (Col6a2), transcript variant 2, mRNA. / P12110* / collagen type VI alpha 2 chain*ENSMUSG0000002024129
Col6a1 / Q04857 / Collagen alpha-1(VI) chain / P12109* / collagen type VI alpha 1 chain*ENSMUSG0000000111928
Q8K4Q8 / Colec12 / Collectin-12 / Q5KU26* / collectin subfamily member 12*ENSMUSG0000003610320
Q8C850 / Scara3 / Scavenger receptor class A member 3 / Q6AZY7*ENSMUSG0000003446316


Protein motifs (from Interpro)
Interpro ID Name
 IPR008160  Collagen triple helix repeat
 IPR011936  Myxococcus cysteine-rich repeat
 IPR016133  Insect cysteine-rich antifreeze protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008582 regulation of synaptic growth at neuromuscular junction IMP
 biological_processGO:0042135 neurotransmitter catabolic process IEA
 biological_processGO:0071340 skeletal muscle acetylcholine-gated channel clustering IMP
 biological_processGO:0090150 establishment of protein localization to membrane IMP
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0031594 neuromuscular junction IDA
 cellular_componentGO:0045202 synapse IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000745 tremors "repetitive, cyclical movements of the body or a body part; usually involuntary, but can also manifest in response to an attempt at movement" [MeSH:National Library of Medicine - Medical Subject Headings , 2003, Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
Show

Allelic Composition: Dmdmdx/Y,Dtnatm1Jrs/Dtnatm1Jrs
Genetic Background: involves: 129X1/SvJ * C57BL/10ScSn

Allelic Composition: Colqtm2Jrs/Colqtm2Jrs
Genetic Background: involves: 129S1/Sv * 129X1/SvJ

 MP:0001053 abnormal neuromuscular synapse "malformed or absent membrane to membrane contact of a motor axon and a muscle myofiber resulting in aberrant transmission of nerve impulses" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, MGI:CLS, J:60159, J:47439]
Show

Allelic Composition: Dmdmdx/Y,Dtnatm1Jrs/Dtnatm1Jrs
Genetic Background: involves: 129X1/SvJ * C57BL/10ScSn

Allelic Composition: Colqtm2Jrs/Colqtm2Jrs
Genetic Background: involves: 129S1/Sv * 129X1/SvJ

 MP:0001265 reduced body size "smaller than average body weight, height and/or length of an organism compared to controls" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, J:23170]
Show

Allelic Composition: Dmdmdx/Y,Dtnatm1Jrs/Dtnatm1Jrs
Genetic Background: involves: 129X1/SvJ * C57BL/10ScSn

Allelic Composition: Colqtm2Jrs/Colqtm2Jrs
Genetic Background: involves: 129S1/Sv * 129X1/SvJ

 MP:0001732 postnatal growth retardation "slow or limited development after birth " [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Dmdmdx/Y,Dtnatm1Jrs/Dtnatm1Jrs
Genetic Background: involves: 129X1/SvJ * C57BL/10ScSn

Allelic Composition: Colqtm2Jrs/Colqtm2Jrs
Genetic Background: involves: 129S1/Sv * 129X1/SvJ

 MP:0002083 premature death "death after 3 weeks of age, but before normal life span" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Dmdmdx/Y,Dtnatm1Jrs/Dtnatm1Jrs
Genetic Background: involves: 129X1/SvJ * C57BL/10ScSn

Allelic Composition: Colqtm2Jrs/Colqtm2Jrs
Genetic Background: involves: 129S1/Sv * 129X1/SvJ

 MP:0008770 decreased survivor rate "a smaller percentage of organisms than expected survive to adulthood and have a lifespan similar to controls" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Dmdmdx/Y,Dtnatm1Jrs/Dtnatm1Jrs
Genetic Background: involves: 129X1/SvJ * C57BL/10ScSn

Allelic Composition: Colqtm2Jrs/Colqtm2Jrs
Genetic Background: involves: 129S1/Sv * 129X1/SvJ

 MP:0011084 partial lethality at weaning "the appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms at weaning age" [MGI:csmith]
Show

Allelic Composition: Dmdmdx/Y,Dtnatm1Jrs/Dtnatm1Jrs
Genetic Background: involves: 129X1/SvJ * C57BL/10ScSn

Allelic Composition: Colqtm2Jrs/Colqtm2Jrs
Genetic Background: involves: 129S1/Sv * 129X1/SvJ

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr