ENSDARG00000100781


Danio rerio

Features
Gene ID: ENSDARG00000100781
  
Biological name :col28a2b
  
Synonyms : col28a2b / collagen, type XXVIII, alpha 2b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 3640381
Gene end: 3675797
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000141077
swissprot - A0A0G2L8G8
ZFIN ID - ZDB-GENE-130530-762
Ensembl - ENSDARG00000100781
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000010657Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
col28a2a / collagen, type XXVIII, alpha 2aENSDARG0000007632168
col28a1a / collagen, type XXVIII, alpha 1a / Q2UY11* / Q2UY09* / COL28A1* / Collagen alpha-1(XXVIII) chain * / collagen type XXVIII alpha 1 chain*ENSDARG0000007708449
col28a1b / collagen, type XXVIII, alpha 1b / Q2UY09* / COL28A1* / collagen type XXVIII alpha 1 chain*ENSDARG0000008708748
col6a2 / collagen, type VI, alpha 2 / P12110* / Q02788* / collagen type VI alpha 2 chain* / Mus musculus collagen, type VI, alpha 2 (Col6a2), transcript variant 2, mRNA.*ENSDARG0000006143623
col17a1b / collagen, type XVII, alpha 1b / Q9UMD9* / Q07563* / COL17A1* / collagen type XVII alpha 1 chain* / Collagen alpha-1(XVII) chain 120 kDa linear IgA disease antigen homolog*ENSDARG0000007901122
col6a1 / collagen, type VI, alpha 1 / Q04857* / P12109* / Collagen alpha-1(VI) chain * / collagen type VI alpha 1 chain*ENSDARG0000007490822
col17a1a / collagen, type XVII, alpha 1a / Q9UMD9* / Q07563* / COL17A1* / collagen type XVII alpha 1 chain* / Collagen alpha-1(XVII) chain 120 kDa linear IgA disease antigen homolog*ENSDARG0000006941520
colq / collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase / O35348* / Q9Y215* / Acetylcholinesterase collagenic tail peptide * / collagen like tail ...ENSDARG0000001969211
wu:fc38h03ENSDARG0000007421611
A5PMY6 / colec12 / collectin sub-family member 12 / Q8K4Q8* / Q5KU26* / Collectin-12 * / collectin subfamily member 12*ENSDARG0000006114010
scara3 / scavenger receptor class A, member 3 / Q6AZY7*ENSDARG000000080607


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR002223  Pancreatic trypsin inhibitor Kunitz domain
 IPR008160  Collagen triple helix repeat
 IPR020901  Proteinase inhibitor I2, Kunitz, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010951 negative regulation of endopeptidase activity IEA
 molecular_functionGO:0004867 serine-type endopeptidase inhibitor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr