ENSG00000091409


Homo sapiens

Features
Gene ID: ENSG00000091409
  
Biological name :ITGA6
  
Synonyms : integrin subunit alpha 6 / ITGA6 / P23229
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: q31.1
Gene start: 172427354
Gene end: 172506282
  
Corresponding Affymetrix probe sets: 201656_at (Human Genome U133 Plus 2.0 Array)   215177_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000406694
Ensembl peptide - ENSP00000394169
Ensembl peptide - ENSP00000413470
Ensembl peptide - ENSP00000264107
Ensembl peptide - ENSP00000386614
Ensembl peptide - ENSP00000386896
Ensembl peptide - ENSP00000388435
NCBI entrez gene - 3655     See in Manteia.
OMIM - 147556
RefSeq - XM_017004008
RefSeq - NM_001316306
RefSeq - XM_006712510
RefSeq - XM_006712511
RefSeq - XM_017004005
RefSeq - XM_017004006
RefSeq - XM_017004007
RefSeq - NM_000210
RefSeq - NM_001079818
RefSeq Peptide - NP_001303235
RefSeq Peptide - NP_000201
RefSeq Peptide - NP_001073286
swissprot - H7BZ97
swissprot - P23229
swissprot - C9JXX7
Ensembl - ENSG00000091409
  
Related genetic diseases (OMIM): 226730 - Epidermolysis bullosa, junctional, with pyloric stenosis, 226730
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CU469503.1ENSDARG00000099348Danio rerio
 itga6aENSDARG00000042282Danio rerio
 itga6bENSDARG00000069946Danio rerio
 itga6lENSDARG00000056018Danio rerio
 ITGA6ENSGALG00000034007Gallus gallus
 Itga6ENSMUSG00000027111Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ITGA7 / Q13683 / integrin subunit alpha 7ENSG0000013542448
ITGA3 / P26006 / integrin subunit alpha 3ENSG0000000588436
ITGA8 / P53708 / integrin subunit alpha 8ENSG0000007794327
ITGAV / P06756 / integrin subunit alpha VENSG0000013844827
ITGA5 / P08648 / integrin subunit alpha 5ENSG0000016163826
ITGA4 / P13612 / integrin subunit alpha 4ENSG0000011523225
ITGA2B / P08514 / integrin subunit alpha 2bENSG0000000596124
ITGA9 / Q13797 / integrin subunit alpha 9ENSG0000014466824
ITGA10 / O75578 / integrin subunit alpha 10ENSG0000014312721
ITGA1 / P56199 / integrin subunit alpha 1ENSG0000021394921
ITGA11 / Q9UKX5 / integrin subunit alpha 11ENSG0000013780921
ITGAX / P20702 / integrin subunit alpha XENSG0000014067820
ITGAM / P11215 / integrin subunit alpha MENSG0000016989620
ITGA2 / P17301 / integrin subunit alpha 2ENSG0000016417120
ITGAD / Q13349 / integrin subunit alpha DENSG0000015688619
ITGAE / P38570 / integrin subunit alpha EENSG0000008345718
ITGAL / P20701 / integrin subunit alpha LENSG0000000584418


Protein motifs (from Interpro)
Interpro ID Name
 IPR000413  Integrin alpha chain
 IPR013517  FG-GAP repeat
 IPR013519  Integrin alpha beta-propellor
 IPR013649  Integrin alpha-2
 IPR018184  Integrin alpha chain, C-terminal cytoplasmic region, conserved site
 IPR032695  Integrin domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007044 cell-substrate junction assembly TAS
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007160 cell-matrix adhesion IEA
 biological_processGO:0007229 integrin-mediated signaling pathway IEA
 biological_processGO:0010668 ectodermal cell differentiation IEP
 biological_processGO:0010811 positive regulation of cell-substrate adhesion IEA
 biological_processGO:0022409 positive regulation of cell-cell adhesion IEA
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0030335 positive regulation of cell migration IMP
 biological_processGO:0031581 hemidesmosome assembly TAS
 biological_processGO:0031589 cell-substrate adhesion IMP
 biological_processGO:0031668 cellular response to extracellular stimulus IEA
 biological_processGO:0033627 cell adhesion mediated by integrin IEA
 biological_processGO:0035878 nail development IMP
 biological_processGO:0042327 positive regulation of phosphorylation IMP
 biological_processGO:0042475 odontogenesis of dentin-containing tooth IEA
 biological_processGO:0043065 positive regulation of apoptotic process IGI
 biological_processGO:0043547 positive regulation of GTPase activity IMP
 biological_processGO:0043588 skin development IMP
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IMP
 biological_processGO:0046847 filopodium assembly IEA
 biological_processGO:0048565 digestive tract development IMP
 biological_processGO:0050873 brown fat cell differentiation IEA
 biological_processGO:0050900 leukocyte migration IEA
 biological_processGO:0071407 cellular response to organic cyclic compound IEA
 biological_processGO:0072001 renal system development IMP
 biological_processGO:0097186 amelogenesis IMP
 biological_processGO:0098609 cell-cell adhesion IEA
 biological_processGO:2001237 negative regulation of extrinsic apoptotic signaling pathway IMP
 cellular_componentGO:0005604 basement membrane IEA
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0005913 cell-cell adherens junction IEA
 cellular_componentGO:0005925 focal adhesion HDA
 cellular_componentGO:0008305 integrin complex IEA
 cellular_componentGO:0009897 external side of plasma membrane IEA
 cellular_componentGO:0009925 basal plasma membrane IEA
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016323 basolateral plasma membrane IEA
 cellular_componentGO:0030056 hemidesmosome IEA
 cellular_componentGO:0030175 filopodium IEA
 cellular_componentGO:0034676 integrin alpha6-beta4 complex IEA
 cellular_componentGO:0045178 basal part of cell IEA
 molecular_functionGO:0005178 integrin binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0031994 insulin-like growth factor I binding IDA
 molecular_functionGO:0038132 neuregulin binding IDA
 molecular_functionGO:0043236 laminin binding IEA
 molecular_functionGO:0045296 cadherin binding IDA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Assembly of collagen fibrils and other multimeric structures
Basigin interactions
Integrin cell surface interactions
Laminin interactions
Syndecan interactions
Type I hemidesmosome assembly


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000070 Ureterocele 
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 HP:0000075 Renal duplication 
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 HP:0000110 Renal dysplasia 
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 HP:0000119 Genitourinary abnormality "The presence of any abnormality of the genitourinary system." [HPO:curators]
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 HP:0000126 Hydronephrosis 
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 HP:0000656 Ectropion "An abnormal turning outward of the lower eyelid." [HPO:sdoelken]
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 HP:0000790 Hematuria "The presence of blood in the urine. Hematuria may be gross hematuria (visible to the naked eye) or microscopic hematuria (detected by dipstick or microscopic examination of the urine)." [HPO:curators]
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 HP:0001030 Fragile skin 
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 HP:0001056 Milia 
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 HP:0001057 Aplasia cutis congenita "A developmental defect resulting in the congenital absence of skin in multiple or solitary non-inflammatory, well-demarcated, oval or circular ulcers with a diameter of about 1 to 2 cm. Aplasia cutis congenita most commonly occurs on the scalp, but may present in the face, trunk, or limbs." [HPO:curators]
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 HP:0001059 Pterygia "Pterygia are winglike triangular membranes occurring in the neck, eyes, knees, elbows, ankles or digits." [HPO:curators]
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 HP:0001060 Axillary pterygia 
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 HP:0001075 Atrophic scars 
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 HP:0001522 Death in infancy 
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 HP:0001561 Polyhydramnios 
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 HP:0001581 Recurrent skin infections "Infections of the skin that happen multiple times." [HPO:curators]
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 HP:0001798 Anonychia "Total absence of nails." [HPO:curators]
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 HP:0002017 Nausea and vomiting 
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 HP:0002032 Esophageal atresia "A developmental defect resulting in complete obliteration of the lumen of the esophagus such that the esophagus ends in a blind pouch rather than connecting to the stomach." [HPO:curators]
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 HP:0002041 Intractable diarrhea 
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 HP:0002164 Nail dysplasia 
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 HP:0002804 Arthrogryposis multiplex congenita 
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 HP:0003270 Abdominal distention "Enlargement or distention of the abdomen, which can be a secondary feature associated with a number of conditions such as bowel obstruction." [HPO:curators]
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 HP:0003341 Skin cleavage in the lamina lucida 
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 HP:0003577 Onset at birth 
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 HP:0004399 Congenital pyloric atresia 
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 HP:0005984 Elevated maternal serum alpha-fetoprotein "An elevation of alpha-feto protein in the maternal serum." [HPO:curators]
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 HP:0006297 Hypoplastic dental enamel 
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 HP:0008404 Nail dystrophy, variable 
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 HP:0010477 Aplasia of the bladder "Absence of the urinary bladder." [HPO:curators]
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 HP:0011100 Intestinal atresia "An abnormal closure, or `atresia` (PATO:0001819) of the tubular structure of the `intestine` (FMA:7199)." [HPO:probinson]
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 HP:0012227 Urethral stricture "Narrowing of the urethra associated with inflammation or scar tissue." [HPO:probinson]
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 HP:0100577 Urinary bladder inflammation "`Inflammation`(MPATH:212) of the `urinary bladder` (FMA:15900)." [HPO:probinson]
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 HP:0200097 Oral mucusa blisters 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000186847 KRT14 / P02533 / keratin 14  / reaction / complex
 ENSG00000132470 ITGB4 / P16144 / integrin subunit beta 4  / complex
 ENSG00000186081 KRT5 / P13647 / keratin 5  / complex / reaction
 ENSG00000178209 PLEC / Q15149 / plectin  / complex / reaction
 ENSG00000172037 LAMB2 / P55268 / laminin subunit beta 2  / reaction / complex
 ENSG00000058085 LAMC2 / Q13753 / laminin subunit gamma 2  / complex / reaction
 ENSG00000065618 Q9UMD9 / COL17A1 / collagen type XVII alpha 1 chain  / complex / reaction
 ENSG00000177697 CD151 / P48509 / CD151 molecule (Raph blood group)  / reaction / complex
 ENSG00000196878 LAMB3 / Q13751 / laminin subunit beta 3  / reaction / complex
 ENSG00000130702 LAMA5 / O15230 / laminin subunit alpha 5  / complex / reaction
 ENSG00000135862 LAMC1 / P11047 / laminin subunit gamma 1  / reaction / complex
 ENSG00000172270 BSG / P35613 / basigin (Ok blood group)  / reaction / complex
 ENSG00000091136 LAMB1 / P07942 / laminin subunit beta 1  / reaction / complex
 ENSG00000053747 LAMA3 / Q16787 / laminin subunit alpha 3  / complex / reaction
 ENSG00000151914 DST / Q03001 / dystonin  / reaction / complex
 ENSG00000150093 ITGB1 / P05556 / integrin subunit beta 1  / complex






 

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