ENSG00000053747


Homo sapiens

Features
Gene ID: ENSG00000053747
  
Biological name :LAMA3
  
Synonyms : LAMA3 / laminin subunit alpha 3 / Q16787
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 18
Strand: 1
Band: q11.2
Gene start: 23689443
Gene end: 23955066
  
Corresponding Affymetrix probe sets: 1560078_at (Human Genome U133 Plus 2.0 Array)   1563772_a_at (Human Genome U133 Plus 2.0 Array)   1568879_a_at (Human Genome U133 Plus 2.0 Array)   203726_s_at (Human Genome U133 Plus 2.0 Array)   234608_at (Human Genome U133 Plus 2.0 Array)   234719_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000466658
Ensembl peptide - ENSP00000466557
Ensembl peptide - ENSP00000467473
Ensembl peptide - ENSP00000468316
Ensembl peptide - ENSP00000468315
Ensembl peptide - ENSP00000467662
Ensembl peptide - ENSP00000269217
Ensembl peptide - ENSP00000324532
Ensembl peptide - ENSP00000382432
Ensembl peptide - ENSP00000464836
NCBI entrez gene - 3909     See in Manteia.
OMIM - 600805
RefSeq - XM_017025744
RefSeq - NM_000227
RefSeq - NM_001127717
RefSeq - NM_001127718
RefSeq - NM_198129
RefSeq - XM_011525978
RefSeq - XM_011525979
RefSeq - XM_011525980
RefSeq - XM_011525981
RefSeq - XM_011525982
RefSeq - XM_017025743
RefSeq Peptide - NP_000218
RefSeq Peptide - NP_001121189
RefSeq Peptide - NP_001121190
RefSeq Peptide - NP_937762
swissprot - A0A0A0MSA0
swissprot - Q16787
swissprot - K7EMU9
swissprot - K7EPP3
swissprot - K7EQ42
swissprot - K7ERM0
swissprot - K7EIP4
swissprot - A0A075B783
swissprot - A0A0A6YYF2
swissprot - A0A0A0MTS5
Ensembl - ENSG00000053747
  
Related genetic diseases (OMIM): 226650 - Epidermolysis bullosa, generalized atrophic benign, 226650
  226700 - Epidermolysis bullosa, junctional, Herlitz type, 226700
  245660 - Laryngoonychocutaneous syndrome, 245660
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lama3ENSDARG00000071462Danio rerio
 si:ch211-241e1.3ENSDARG00000022615Danio rerio
 ENSGALG00000043390Gallus gallus
 ENSGALG00000015056Gallus gallus
 Lama3ENSMUSG00000024421Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LAMA5 / O15230 / laminin subunit alpha 5ENSG0000013070243
LAMA2 / P24043 / laminin subunit alpha 2ENSG0000019656925
LAMA1 / P25391 / laminin subunit alpha 1ENSG0000010168024
LAMA4 / Q16363 / laminin subunit alpha 4ENSG0000011276915
LAMB4 / A4D0S4 / laminin subunit beta 4ENSG0000009112813
LAMB2 / P55268 / laminin subunit beta 2ENSG0000017203712
LAMB1 / P07942 / laminin subunit beta 1ENSG0000009113612
LAMC3 / Q9Y6N6 / laminin subunit gamma 3ENSG0000005055511
LAMC1 / P11047 / laminin subunit gamma 1ENSG0000013586211
LAMC2 / Q13753 / laminin subunit gamma 2ENSG000000580858
LAMB3 / Q13751 / laminin subunit beta 3ENSG000001968787
NTN4 / Q9HB63 / netrin 4ENSG000000745275


Protein motifs (from Interpro)
Interpro ID Name
 IPR000034  Laminin IV
 IPR000742  EGF-like domain
 IPR001791  Laminin G domain
 IPR002049  Laminin EGF domain
 IPR008211  Laminin, N-terminal
 IPR008979  Galactose-binding-like domain superfamily
 IPR009254  Laminin alpha, domain I
 IPR010307  Laminin domain II
 IPR013032  EGF-like, conserved site
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0008544 epidermis development TAS
 biological_processGO:0022617 extracellular matrix disassembly TAS
 biological_processGO:0030155 regulation of cell adhesion IEA
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0030334 regulation of cell migration IEA
 biological_processGO:0031581 hemidesmosome assembly TAS
 biological_processGO:0035987 endodermal cell differentiation IEP
 biological_processGO:0045995 regulation of embryonic development IEA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005604 basement membrane TAS
 cellular_componentGO:0005610 laminin-5 complex IEA
 cellular_componentGO:0005783 endoplasmic reticulum IDA
 cellular_componentGO:0031012 extracellular matrix IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005102 signaling receptor binding IEA
 molecular_functionGO:0005198 structural molecule activity NAS


Pathways (from Reactome)
Pathway description
Degradation of the extracellular matrix
Assembly of collagen fibrils and other multimeric structures
Anchoring fibril formation
Laminin interactions
Non-integrin membrane-ECM interactions
ECM proteoglycans
Type I hemidesmosome assembly
MET activates PTK2 signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000478 Abnormality of the eyes "Any abnormality of the `eyes` (FMA:54448), including location, spacing, and intraocular abnormalities." [HPO:curators]
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000670 Carious teeth 
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 HP:0000705 Amelogenesis imperfecta 
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0000982 Palmoplantar keratoderma 
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 HP:0001000 Abnormality of skin pigmentation 
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 HP:0001056 Milia 
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 HP:0001057 Aplasia cutis congenita "A developmental defect resulting in the congenital absence of skin in multiple or solitary non-inflammatory, well-demarcated, oval or circular ulcers with a diameter of about 1 to 2 cm. Aplasia cutis congenita most commonly occurs on the scalp, but may present in the face, trunk, or limbs." [HPO:curators]
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 HP:0001075 Atrophic scars 
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 HP:0001425 Heterogeneous 
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 HP:0001508 Failure to thrive 
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 HP:0001510 Growth retardation 
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 HP:0001522 Death in infancy 
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 HP:0001581 Recurrent skin infections "Infections of the skin that happen multiple times." [HPO:curators]
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 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
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 HP:0001602 Laryngeal stenosis 
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 HP:0001609 Hoarse voice 
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 HP:0001612 Weak cry 
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 HP:0001615 Hoarse cry 
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 HP:0001644 Dilated cardiomyopathy 
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 HP:0001798 Anonychia "Total absence of nails." [HPO:curators]
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 HP:0001806 Onycholysis 
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 HP:0001808 Fragile nails 
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 HP:0001818 Paronychia "The nail disease paronychia is an often-tender bacterial or fungal hand infection or foot infection where the nail and skin meet at the side or the base of a finger or toenail. The infection can start suddenly (acute paronychia) or gradually (chronic paronychia)." [HPO:curators]
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 HP:0001903 Anemia 
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 HP:0001944 Dehydration 
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 HP:0002021 Pyloric stenosis 
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 HP:0002043 Esophageal stricture 
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 HP:0002094 Dyspnea 
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 HP:0002164 Nail dysplasia 
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 HP:0002231 Sparse body hair "Sparseness of the body hair." [HPO:probinson]
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 HP:0002878 Early respiratory failure 
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 HP:0003341 Skin cleavage in the lamina lucida 
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 HP:0003577 Onset at birth 
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 HP:0003593 Early onset 
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 HP:0004057 Mitten deformity 
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 HP:0004552 scarring alopecia of scalp 
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 HP:0006089 Palmar hyperhidrosis 
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 HP:0006297 Hypoplastic dental enamel 
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 HP:0006511 Laryngeal stridor 
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 HP:0006739 Squamous cell carcinoma of the skin "Squamous cell carcinoma of the skin is a malignant tumor of squamous epithelium." [HPO:curators]
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 HP:0007383 Congenital localized absence of skin 
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 HP:0007556 Plantar hyperkeratosis "`Hyperkeratosis` (HP:0000962) affecting the sole of the foot." [HPO:probinson]
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 HP:0008066 Abnormal blistering of the skin 
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 HP:0008390 Recurrent loss of toenails and fingernails 
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 HP:0008404 Nail dystrophy, variable 
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 HP:0010296 Ankyloglossia "Short or anteriorly attached lingual frenulum associated with limited mobility of the tongue." [pmid:19125428]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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 HP:0200041 skin erosion "A discontinuity of the skin exhibiting incomplete loss of the epidermis, a lesion that is moist, circumscribed, and usually depressed." [HPO:SKOEHLER]
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 HP:0200042 skin ulcer "A discontinuity of the skin exhibiting complete loss of the epidermis and often portions of the dermis and even subcutaneous fat." [HPO:SKOEHLER]
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 HP:0200097 Oral mucusa blisters 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000005884 ITGA3 / P26006 / integrin subunit alpha 3  / reaction / complex
 ENSG00000186847 KRT14 / P02533 / keratin 14  / complex / reaction
 ENSG00000132470 ITGB4 / P16144 / integrin subunit beta 4  / complex / reaction
 ENSG00000186081 KRT5 / P13647 / keratin 5  / reaction / complex
 ENSG00000091409 ITGA6 / P23229 / integrin subunit alpha 6  / reaction / complex
 ENSG00000135862 LAMC1 / P11047 / laminin subunit gamma 1  / complex
 ENSG00000137673 MMP7 / P09237 / matrix metallopeptidase 7  / reaction
 ENSG00000122194 PLG / P00747 / plasminogen  / reaction
 ENSG00000157227 MMP14 / P50281 / matrix metallopeptidase 14  / reaction
 ENSG00000168487 BMP1 / P13497 / bone morphogenetic protein 1  / reaction
 ENSG00000178209 PLEC / Q15149 / plectin  / complex / reaction
 ENSG00000150093 ITGB1 / P05556 / integrin subunit beta 1  / complex / reaction
 ENSG00000164171 ITGA2 / P17301 / integrin subunit alpha 2  / complex / reaction
 ENSG00000058085 LAMC2 / Q13753 / laminin subunit gamma 2  / complex
 ENSG00000196878 LAMB3 / Q13751 / laminin subunit beta 3  / complex
 ENSG00000172037 LAMB2 / P55268 / laminin subunit beta 2  / complex
 ENSG00000065618 Q9UMD9 / COL17A1 / collagen type XVII alpha 1 chain  / complex / reaction
 ENSG00000177697 CD151 / P48509 / CD151 molecule (Raph blood group)  / reaction / complex
 ENSG00000151914 DST / Q03001 / dystonin  / complex / reaction
 ENSG00000091136 LAMB1 / P07942 / laminin subunit beta 1  / complex
 ENSG00000187045 Q8IU80 / TMPRSS6 / transmembrane serine protease 6  / reaction






 

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