ENSG00000187045


Homo sapiens

Features
Gene ID: ENSG00000187045
  
Biological name :TMPRSS6
  
Synonyms : Q8IU80 / TMPRSS6 / transmembrane serine protease 6
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 22
Strand: -1
Band: q12.3
Gene start: 37065436
Gene end: 37109563
  
Corresponding Affymetrix probe sets: 214955_at (Human Genome U133 Plus 2.0 Array)   232941_at (Human Genome U133 Plus 2.0 Array)   234367_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000385453
Ensembl peptide - ENSP00000400317
Ensembl peptide - ENSP00000397691
Ensembl peptide - ENSP00000392433
Ensembl peptide - ENSP00000334962
Ensembl peptide - ENSP00000371211
Ensembl peptide - ENSP00000384964
NCBI entrez gene - 164656     See in Manteia.
OMIM - 609862
RefSeq - NM_153609
RefSeq - XM_011529989
RefSeq - NM_001289000
RefSeq - NM_001289001
RefSeq Peptide - NP_001275929
RefSeq Peptide - NP_001275930
RefSeq Peptide - NP_705837
swissprot - B0QYB3
swissprot - Q8IU80
swissprot - B0QYB6
swissprot - X6REP5
Ensembl - ENSG00000187045
  
Related genetic diseases (OMIM): 206200 - Iron-refractory iron deficiency anemia, 206200
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TMPRSS6ENSGALG00000012483Gallus gallus
 Q9DBI0ENSMUSG00000016942Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ST14 / Q9Y5Y6 / suppression of tumorigenicity 14ENSG0000014941830
Q7RTY8 / TMPRSS7 / transmembrane serine protease 7ENSG0000017604025
CORIN / Q9Y5Q5 / corin, serine peptidaseENSG0000014524422
P98073 / TMPRSS15 / transmembrane serine protease 15ENSG0000015464619
Q7Z410 / TMPRSS9 / transmembrane serine protease 9ENSG0000017829719
KLKB1 / P03952 / kallikrein B1ENSG0000016434418
F11 / P03951 / coagulation factor XIENSG0000008892617
Q9H3S3 / TMPRSS5 / transmembrane serine protease 5ENSG0000016668217
Q9BYE2 / TMPRSS13 / transmembrane serine protease 13ENSG0000013774716
P57727 / TMPRSS3 / transmembrane serine protease 3ENSG0000016018316
O15393 / TMPRSS2 / transmembrane serine protease 2ENSG0000018401215
Q9NRS4 / TMPRSS4 / transmembrane serine protease 4ENSG0000013764815
HPN / hepsin / P05981ENSG0000010570714


Protein motifs (from Interpro)
Interpro ID Name
 IPR000082  SEA domain
 IPR000859  CUB domain
 IPR001254  Serine proteases, trypsin domain
 IPR001314  Peptidase S1A, chymotrypsin family
 IPR002172  Low-density lipoprotein (LDL) receptor class A repeat
 IPR009003  Peptidase S1, PA clan
 IPR017118  Peptidase S1A, matriptase-2
 IPR018114  Serine proteases, trypsin family, histidine active site
 IPR033116  Serine proteases, trypsin family, serine active site
 IPR035914  Spermadhesin, CUB domain superfamily
 IPR036055  LDL receptor-like superfamily
 IPR036364  SEA domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001525 angiogenesis NAS
 biological_processGO:0006508 proteolysis IDA
 biological_processGO:0006879 cellular iron ion homeostasis IEA
 biological_processGO:0022617 extracellular matrix disassembly TAS
 biological_processGO:0030198 extracellular matrix organization NAS
 biological_processGO:0030514 negative regulation of BMP signaling pathway IEA
 biological_processGO:0030574 collagen catabolic process TAS
 biological_processGO:0033619 membrane protein proteolysis IMP
 biological_processGO:0035556 intracellular signal transduction NAS
 biological_processGO:0042730 fibrinolysis IDA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IMP
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0055072 iron ion homeostasis IEA
 biological_processGO:0097264 self proteolysis IMP
 cellular_componentGO:0005615 extracellular space IDA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004222 metalloendopeptidase activity TAS
 molecular_functionGO:0004252 serine-type endopeptidase activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008236 serine-type peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Degradation of the extracellular matrix


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000962 Hyperkeratosis "Hyperkeratosis is thickening of the outer layer of the skin, the stratum corneum, which is composed of large, polyhedral, plate-like envelopes filled with keratin which are the dead cells that have migrated up from the stratum granulosum." [HPO:curators]
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 HP:0000980 Pallor 
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 HP:0001249 Mental retardation 
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 HP:0001406 Intrahepatic cholestasis 
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 HP:0002242 Abnormality of the intestines 
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 HP:0004447 Poikilocytosis 
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 HP:0004840 hypochromic, microcytic anemia 
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 HP:0008064 Ichthyosiform abnormality of the skin 
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 HP:0009830 Peripheral neuropathy "Peripheral neuropathy is a general term for any disorder of the peripheral nervous system. The main clinical features used to classify peripheral neuropathy are distribution, type (mainly demyelinating versus mainly axonal), duration, and course." [HPO:curators]
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 HP:0011273 Anisocytosis "Abnormally increased variability in the size of erythrocytes." [HPO:probinson]
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 HP:0011967 Hypocupremia "A reduced concentration of `copper` (CHEBI:28694) in the `blood` (FMA:9670)." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000135862 LAMC1 / P11047 / laminin subunit gamma 1  / reaction
 ENSG00000053747 LAMA3 / Q16787 / laminin subunit alpha 3  / reaction
 ENSG00000130702 LAMA5 / O15230 / laminin subunit alpha 5  / reaction
 ENSG00000091136 LAMB1 / P07942 / laminin subunit beta 1  / reaction
 ENSG00000011465 DCN / P07585 / decorin  / reaction
 ENSG00000196878 LAMB3 / Q13751 / laminin subunit beta 3  / reaction
 ENSG00000058085 LAMC2 / Q13753 / laminin subunit gamma 2  / reaction






 

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