ENSG00000168487


Homo sapiens

Features
Gene ID: ENSG00000168487
  
Biological name :BMP1
  
Synonyms : BMP1 / bone morphogenetic protein 1 / P13497
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: 1
Band: p21.3
Gene start: 22164736
Gene end: 22212326
  
Corresponding Affymetrix probe sets: 1569001_at (Human Genome U133 Plus 2.0 Array)   1569002_x_at (Human Genome U133 Plus 2.0 Array)   202701_at (Human Genome U133 Plus 2.0 Array)   205574_x_at (Human Genome U133 Plus 2.0 Array)   206725_x_at (Human Genome U133 Plus 2.0 Array)   207595_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000428798
Ensembl peptide - ENSP00000430015
Ensembl peptide - ENSP00000430977
Ensembl peptide - ENSP00000430406
Ensembl peptide - ENSP00000305714
Ensembl peptide - ENSP00000306121
Ensembl peptide - ENSP00000346941
Ensembl peptide - ENSP00000380915
Ensembl peptide - ENSP00000427950
Ensembl peptide - ENSP00000428249
Ensembl peptide - ENSP00000428332
Ensembl peptide - ENSP00000428665
NCBI entrez gene - 649     See in Manteia.
OMIM - 112264
RefSeq - XM_011544617
RefSeq - XM_006716386
RefSeq - NM_001199
RefSeq - NM_006129
RefSeq - XM_017013738
RefSeq Peptide - NP_006120
RefSeq Peptide - NP_001190
swissprot - Q3MIM8
swissprot - P13497
swissprot - E5RH22
swissprot - B7ZKR5
Ensembl - ENSG00000168487
  
Related genetic diseases (OMIM): 614856 - Osteogenesis imperfecta, type XIII, 614856
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 bmp1aENSDARG00000028071Danio rerio
 bmp1bENSDARG00000028053Danio rerio
 Bmp1ENSMUSG00000022098Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TLL2 / Q9Y6L7 / tolloid like 2ENSG0000009558775
TLL1 / O43897 / tolloid like 1ENSG0000003829573
CUBN / O60494 / cubilinENSG0000010761130
CDCP2 / Q5VXM1 / CUB domain containing protein 2ENSG0000015721113
MFRP / Q9BY79 / membrane frizzled-related proteinENSG0000023571813
NETO2 / Q8NC67 / neuropilin and tolloid like 2ENSG0000017120812
PCOLCE / Q15113 / procollagen C-endopeptidase enhancerENSG0000010633312
Q9UKZ9 / PCOLCE2 / procollagen C-endopeptidase enhancer 2ENSG0000016371011
NETO1 / Q8TDF5 / neuropilin and tolloid like 1ENSG0000016634211


Protein motifs (from Interpro)
Interpro ID Name
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000742  EGF-like domain
 IPR000859  CUB domain
 IPR001506  Peptidase M12A
 IPR001881  EGF-like calcium-binding domain
 IPR006026  Peptidase, metallopeptidase
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR013032  EGF-like, conserved site
 IPR015446  Bone morphogenetic protein 1/tolloid-like protein
 IPR018097  EGF-like calcium-binding, conserved site
 IPR024079  Metallopeptidase, catalytic domain superfamily
 IPR034036  Tolloid/BMP1 peptidase domain
 IPR035914  Spermadhesin, CUB domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development TAS
 biological_processGO:0001502 cartilage condensation TAS
 biological_processGO:0001503 ossification IEA
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0007275 multicellular organism development TAS
 biological_processGO:0010469 regulation of signaling receptor activity IEA
 biological_processGO:0022617 extracellular matrix disassembly TAS
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0034380 high-density lipoprotein particle assembly TAS
 biological_processGO:0051216 cartilage development IEA
 biological_processGO:0061036 positive regulation of cartilage development IDA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0031982 vesicle IEA
 molecular_functionGO:0004222 metalloendopeptidase activity IEA
 molecular_functionGO:0004252 serine-type endopeptidase activity TAS
 molecular_functionGO:0005125 cytokine activity IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008083 growth factor activity IEA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008237 metallopeptidase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Degradation of the extracellular matrix
Collagen biosynthesis and modifying enzymes
Anchoring fibril formation
Crosslinking of collagen fibrils


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000233 Thin vermillion border 
Show

 HP:0000325 Triangular facies 
Show

 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
Show

 HP:0000343 Long philtrum 
Show

 HP:0000411 Protruding ears 
Show

 HP:0000527 Long eyelashes "Mid upper eyelash length >10 mm or increased length of the eyelashes (subjective)." [pmid:19125427]
Show

 HP:0000592 Blue sclerae 
Show

 HP:0000637 Wide palpebral fissures 
Show

 HP:0000768 Pectus carinatum "A deformity of the chest caused by overgrowth of the ribs and characterized by protrusion of the sternum." [HPO:curators]
Show

 HP:0000926 Platyspondyly 
Show

 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
Show

 HP:0001166 Arachnodactyly "Abnormally long and slender fingers ("spider fingers")." [HPO:curators]
Show

 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
Show

 HP:0001382 Joint hypermobility "The ability of a joint to move beyond its normal range of motion." [HPO:curators]
Show

 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
Show

 HP:0002194 Delayed gross motor development 
Show

 HP:0002645 Wormian bones 
Show

 HP:0002751 Kyphoscoliosis 
Show

 HP:0003083 Dislocated radial head "A dislocation of the head of the radius from its socket in the elbow joint." [HPO:curators]
Show

 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0004325 Decreased body weight 
Show

 HP:0011001 Increased bone mineral density "An abnormal increase of bone mineral density, that is, of the amount of matter per cubic centimeter of bones which is often refered to as osteosclerosis. Osteosclerosis can be detected on radiological examination as an increased whiteness (density) of affected bones." [HPO:curators]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000142798 HSPG2 / P98160 / heparan sulfate proteoglycan 2  / reaction
 ENSG00000058085 LAMC2 / Q13753 / laminin subunit gamma 2  / reaction
 ENSG00000196878 LAMB3 / Q13751 / laminin subunit beta 3  / reaction
 ENSG00000113083 LOX / P28300 / lysyl oxidase  / reaction
 ENSG00000118137 APOA1 / P02647 / apolipoprotein A1  / reaction
 ENSG00000129038 LOXL1 / Q08397 / lysyl oxidase like 1  / reaction
 ENSG00000053747 LAMA3 / Q16787 / laminin subunit alpha 3  / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr