ENSG00000142798


Homo sapiens

Features
Gene ID: ENSG00000142798
  
Biological name :HSPG2
  
Synonyms : heparan sulfate proteoglycan 2 / HSPG2 / P98160
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p36.12
Gene start: 21822245
Gene end: 21937297
  
Corresponding Affymetrix probe sets: 201654_s_at (Human Genome U133 Plus 2.0 Array)   201655_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000363808
Ensembl peptide - ENSP00000397573
Ensembl peptide - ENSP00000489161
Ensembl peptide - ENSP00000496473
Ensembl peptide - ENSP00000363827
NCBI entrez gene - 3339     See in Manteia.
OMIM - 142461
RefSeq - XM_017001122
RefSeq - NM_001291860
RefSeq - NM_005529
RefSeq - XM_011541318
RefSeq - XM_017001120
RefSeq - XM_017001121
RefSeq Peptide - NP_005520
RefSeq Peptide - NP_001278789
swissprot - H0Y5A9
swissprot - H7BYA5
swissprot - P98160
swissprot - A0A0U1RQT3
Ensembl - ENSG00000142798
  
Related genetic diseases (OMIM): 224410 - Dyssegmental dysplasia, Silverman-Handmaker type, 224410
  255800 - Schwartz-Jampel syndrome, type 1, 255800
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hspg2ENSDARG00000076564Danio rerio
 HSPG2ENSGALG00000035717Gallus gallus
 Hspg2ENSMUSG00000028763Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AGRN / agrin / O00468ENSG0000018815713
EYS / Q5T1H1 / eyes shut homolog (Drosophila)ENSG0000018810710
EGFLAM / Q63HQ2 / EGF like, fibronectin type III and laminin G domainsENSG000001643187


Protein motifs (from Interpro)
Interpro ID Name
 IPR000034  Laminin IV
 IPR000082  SEA domain
 IPR000742  EGF-like domain
 IPR001791  Laminin G domain
 IPR001881  EGF-like calcium-binding domain
 IPR002049  Laminin EGF domain
 IPR002172  Low-density lipoprotein (LDL) receptor class A repeat
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR013032  EGF-like, conserved site
 IPR013098  Immunoglobulin I-set
 IPR013106  Immunoglobulin V-set domain
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR013783  Immunoglobulin-like fold
 IPR023415  Low-density lipoprotein (LDL) receptor class A, conserved site
 IPR036055  LDL receptor-like superfamily
 IPR036179  Immunoglobulin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001523 retinoid metabolic process TAS
 biological_processGO:0001525 angiogenesis IEA
 biological_processGO:0006024 glycosaminoglycan biosynthetic process TAS
 biological_processGO:0006027 glycosaminoglycan catabolic process TAS
 biological_processGO:0006629 lipid metabolic process TAS
 biological_processGO:0006898 receptor-mediated endocytosis ISS
 biological_processGO:0006954 inflammatory response TAS
 biological_processGO:0007420 brain development TAS
 biological_processGO:0016049 cell growth TAS
 biological_processGO:0016525 negative regulation of angiogenesis TAS
 biological_processGO:0022617 extracellular matrix disassembly TAS
 biological_processGO:0030154 cell differentiation TAS
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0030203 glycosaminoglycan metabolic process TAS
 biological_processGO:0044267 cellular protein metabolic process TAS
 biological_processGO:0072358 cardiovascular system development TAS
 cellular_componentGO:0005576 extracellular region IDA
 cellular_componentGO:0005604 basement membrane TAS
 cellular_componentGO:0005615 extracellular space IDA
 cellular_componentGO:0005796 Golgi lumen TAS
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005925 focal adhesion HDA
 cellular_componentGO:0031012 extracellular matrix ISS
 cellular_componentGO:0043202 lysosomal lumen TAS
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:0098797 plasma membrane protein complex TAS
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008022 protein C-terminus binding IPI
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0050750 low-density lipoprotein particle receptor binding TAS


Pathways (from Reactome)
Pathway description
Degradation of the extracellular matrix
A tetrasaccharide linker sequence is required for GAG synthesis
HS-GAG biosynthesis
HS-GAG degradation
Integrin cell surface interactions
Laminin interactions
Non-integrin membrane-ECM interactions
ECM proteoglycans
Defective B4GALT7 causes EDS, progeroid type
Defective B3GAT3 causes JDSSDHD
Defective EXT2 causes exostoses 2
Defective EXT1 causes exostoses 1, TRPS2 and CHDS
Defective B3GALT6 causes EDSP2 and SEMDJL1
Retinoid metabolism and transport
Amyloid fiber formation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000023 Inguinal hernia 
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000069 Abnormality of the ureters "An abnormality of the ureters, the ductal organs that transport urine from the kidneys to the urinary bladder." [HPO:curators]
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000205 Pursed lips 
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 HP:0000211 Trismus "Limitation in the ability to open the mouth." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000232 Everted lower lip 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000293 Full cheeks 
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 HP:0000294 Low frontal hairline "A condition in which the scalp hair is present at lower than usual areas of the forehead." [HPO:curators]
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 HP:0000298 Mask-like facies 
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 HP:0000316 Hypertelorism 
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 HP:0000343 Long philtrum 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000368 Low-set, posteriorly rotated ears 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000396 Overfolded helices "A condition in which the upper edge of the ear is folded over to a greater degree than normal." [HPO:curators]
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 HP:0000426 Prominent nasal bridge 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000457 Flat nose 
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 HP:0000470 Short neck 
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 HP:0000482 Microcornea "A congenital abnormality of the `cornea` (FMA:58238) in which the cornea and the anterior segment of the eye are smaller than normal. The horizontal diameter of the cornea does not reach 10 mm even in adulthood." [HPO:probinson]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000534 Abnormality of the eyebrow "An abnormality of the `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000545 Myopia 
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 HP:0000581 Blepharophimosis "Reduced width of the palpebral fissures." [HPO:sdoelken]
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 HP:0000592 Blue sclerae 
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 HP:0000600 Abnormality of the pharynx 
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 HP:0000643 Blepharospasm "An involuntary recurrent spasm of both eyelids." [HPO:curators]
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 HP:0000689 Dental malocclusion "Dental malocclusion refers to an abnormality of the occlusion, or alignment, of the teeth and the way the upper and lower teeth fit together, resulting in overcrowding of teeth or in abnormal bite patterns." [HPO:curators]
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 HP:0000737 Irritability 
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 HP:0000739 Anxiety 
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000768 Pectus carinatum "A deformity of the chest caused by overgrowth of the ribs and characterized by protrusion of the sternum." [HPO:curators]
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 HP:0000772 Abnormality of the ribs 
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 HP:0000774 Narrow chest 
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 HP:0000787 Kidney stones 
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 HP:0000912 Sprengel anomaly "A complex deformity characterized by congenital elevation of the scapula." [HPO:curators]
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 HP:0000926 Platyspondyly 
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0000944 Abnormality of the metaphyses 
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 HP:0001083 Ectopia lentis 
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 HP:0001239 Wrist contractures 
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 HP:0001249 Mental retardation 
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 HP:0001265 Hyporeflexia 
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 HP:0001276 Hypertonia 
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001362 Skull defect "A localized defect in the bone of the skull resulting from abnormal embryological development. The defect is covered by normal skin. In some cases, skull x-rays have shown underlying lytic bone lesions which have closed before the age of one year." [HPO:curators]
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 HP:0001374 Congenital hip dislocation 
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 HP:0001385 Hip dysplasia 
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001522 Death in infancy 
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0001548 Overgrowth 
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 HP:0001557 Prenatal movement abnormality 
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 HP:0001561 Polyhydramnios 
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 HP:0001601 Laryngomalacia 
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 HP:0001618 Dysphonia 
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 HP:0001620 High pitched voice 
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 HP:0001621 Soft voice 
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0002047 Malignant hyperthermia "Malignant hyperthermia is characterized by a rapid increase in temperature to 39-42 degrees C in response to inhalational anesthetics such as halothane or to muscle relaxants such as succinylcholine." [HPO:curators]
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 HP:0002089 Pulmonary hypoplasia 
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 HP:0002092 Pulmonary hypertension 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002104 Apnea "Lack of breathing with no movement of the respiratory muscles and no exchange of air in the lungs. This term refers to a disposition to have recurrent episodes of apnea rather than to a single event." [HPO:curators]
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 HP:0002230 Generalized hirsutism "Abnormally increased hair growth over much of the entire body." [HPO:curators]
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 HP:0002486 Myotonia "Myotonia is characterized by an abnormally slow relaxation of the muscles after voluntary contraction or electrical stimulation. During physical examination, myotonia may be elicited by asking the patient to make a tight fist and then quickly open the hand." [HPO:curators]
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 HP:0002644 Abnormality of the pelvis "An abnormality of the bony pelvis (pelvic girdle); which is a ring of bones connecting the vertebral column to the femurs." [HPO:curators]
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 HP:0002645 Wormian bones 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002652 Skeletal dysplasia 
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 HP:0002673 Coxa valga "Coxa valga is a deformity of the hip in which the angle between the femoral shaft and the femoral neck is increased compared to age-adjusted values (about 150 degrees in newborns gradually reducing to 120-130 degrees in adults)." [HPO:curators]
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0002751 Kyphoscoliosis 
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 HP:0002804 Arthrogryposis multiplex congenita 
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 HP:0002808 Kyphosis 
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 HP:0002812 Coxa vara 
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 HP:0002857 Genu valgum 
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 HP:0002879 Anisospondyly 
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 HP:0002938 Lumbar hyperlordosis 
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 HP:0002983 Micromelia 
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 HP:0003016 Metaphyseal widening "Abnormal widening of the metaphyseal regions of long bones." [HPO:curators]
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 HP:0003026 Short long bones 
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 HP:0003042 Elbow dislocation "A dislocation affecting the elbow joint, where the radius, ulna, and humerus meet." [HPO:curators]
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 HP:0003044 Shoulder contractures 
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 HP:0003179 Protrusio acetabuli "Protrusion of the acetabulum, which is the socket that together with the head of the femur forms the heep joint. The protrusion is the result of increased depth of the socket and results in medial displacement of the femoral head." [HPO:curators]
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 HP:0003198 Myopathy 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003273 Hip contractures 
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 HP:0003306 Spinal rigidity 
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 HP:0003307 Hyperlordosis 
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 HP:0003326 Myalgia "A tendency to experience muscle pain." [HPO:curators]
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 HP:0003417 Coronal cleft vertebrae 
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 HP:0003457 Abnormal EMG findings "Abnormal results of investigations using electromyography (EMG)." [HPO:curators]
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 HP:0003712 Muscle hypertrophy "Hypertrophy (increase in size) of muscle cells (as opposed to hyperplasia, which refers to an increase in the number of muscle cells)." [HPO:curators]
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 HP:0003811 Neonatal death 
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 HP:0004298 Abnormality of the abdominal wall "The presence of any abnormality affecting the abdominal wall." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004326 Cachexia 
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 HP:0005257 Thoracic hypoplasia 
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 HP:0005830 Partial flexion contractures of fingers and toes 
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 HP:0005930 Abnormality of the epiphyses 
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 HP:0006473 Anterior bowing of long bones 
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 HP:0006487 Bowing of the long bones 
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 HP:0006499 Abnormality of femoral epiphyses 
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 HP:0007018 Attention deficit hyperactivity disorder "Attention deficit hyperactivity disorder (ADHD) manifests at age 2-3 years or by first grade at the latest. The main symptoms are distractibility, impulsivity, hyperactivity, and often trouble organizing tasks and projects, difficulty going to sleep, and social problems from being aggressive, loud, or impatient." [HPO:curators]
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 HP:0007740 Long eyelashes in irregular rows 
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 HP:0008056 Aplasia/Hypoplasia affecting the eye 
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 HP:0008734 Decreased testicular size 
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 HP:0008872 Feeding problems in infancy 
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 HP:0008873 Short stature, disproportionate short-limbed "A type of short stature characterized by a short limbs but an average-sized trunk." [HPO:curators]
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 HP:0009473 Joint contractures involving the joints of the hand 
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 HP:0009743 Distichiasis "Distichiasis refers to ouble rows of eyelashes." [HPO:curators]
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 HP:0010508 Metatarsus valgus "A condition in which the anterior part of the foot rotates outward away from the midline of the body and the heel remains straight." [HPO:curators]
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 HP:0010978 Abnormality of immune system physiology "A functional abnormality of the `immune system` (FMA:9825)." [HPO:probinson, MP:0001790]
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 HP:0011001 Increased bone mineral density "An abnormal increase of bone mineral density, that is, of the amount of matter per cubic centimeter of bones which is often refered to as osteosclerosis. Osteosclerosis can be detected on radiological examination as an increased whiteness (density) of affected bones." [HPO:curators]
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 HP:0011069 Increased number of teeth "The presence of a `supernumerary` (PATO:0000470), i.e., extra, `tooth` (FMA:12516) or teeth." [HPO:ibailleulforestier]
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 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
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 HP:0012368 Flat face "Absence of concavity or convexity of the face when viewed in profile." [pmid:19125436]
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 HP:0012544 Elevated aldolase level "An increased concentration of fructose 1,6-bisphosphate aldolase in the serum." [ORCID:0000-0001-5208-3432]
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 HP:0100569 Abnormality of ossification/mineralisation of vertebrae 
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 HP:0100612 Odontogenic neoplasm "Neoplasm involving odontogenic cells, an `odontogenic tumor` (MPATH:379)." [HPO:sdoelken]
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 HP:0100795 Abnormally straight spine "The absence of the normal `curvature` (PATO:0001591) of the `vertebral column` (FMA:13478)." [HPO:sdoelken]
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 HP:0100813 Testicular torsion "Testicular torsion is when the spermatic cord to a testicle twists, cutting off the blood supply. The most common symptom is acute testicular pain." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000038295 TLL1 / O43897 / tolloid like 1  / reaction
 ENSG00000087303 NID2 / Q14112 / nidogen 2  / reaction / complex
 ENSG00000102996 MMP15 / P51511 / matrix metallopeptidase 15  / reaction
 ENSG00000116962 NID1 / P14543 / nidogen 1  / complex / reaction
 ENSG00000128052 KDR / P35968 / kinase insert domain receptor  / reaction / complex
 ENSG00000137745 MMP13 / P45452 / matrix metallopeptidase 13  / reaction
 ENSG00000122194 PLG / P00747 / plasminogen  / reaction
 ENSG00000157227 MMP14 / P50281 / matrix metallopeptidase 14  / reaction
 ENSG00000164171 ITGA2 / P17301 / integrin subunit alpha 2  / complex / reaction
 ENSG00000173402 DAG1 / Q14118 / dystroglycan 1  / reaction / complex
 ENSG00000168487 BMP1 / P13497 / bone morphogenetic protein 1  / reaction
 ENSG00000150093 ITGB1 / P05556 / integrin subunit beta 1  / complex / reaction
 ENSG00000149968 MMP3 / P08254 / matrix metallopeptidase 3  / reaction
 ENSG00000135047 CTSL / P07711 / cathepsin L  / reaction
 ENSG00000095587 TLL2 / Q9Y6L7 / tolloid like 2  / reaction
 ENSG00000132703 APCS / P02743 / amyloid P component, serum  / reaction / complex
 ENSG00000163131 CTSS / P25774 / cathepsin S  / reaction






 

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