ENSG00000137745


Homo sapiens

Features
Gene ID: ENSG00000137745
  
Biological name :MMP13
  
Synonyms : matrix metallopeptidase 13 / MMP13 / P45452
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: -1
Band: q22.2
Gene start: 102942995
Gene end: 102955734
  
Corresponding Affymetrix probe sets: 205959_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000339672
Ensembl peptide - ENSP00000260302
Ensembl peptide - ENSP00000482883
NCBI entrez gene - 4322     See in Manteia.
OMIM - 600108
RefSeq - NM_002427
RefSeq Peptide - NP_002418
swissprot - Q7Z5M0
swissprot - G5E971
swissprot - P45452
Ensembl - ENSG00000137745
  
Related genetic diseases (OMIM): 250400 - Metaphyseal dysplasia, Spahr type, 250400
  602111 - Metaphyseal anadysplasia 1, 602111
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 mmp13bENSDARG00000100794Danio rerio
 MMP13ENSGALG00000017183Gallus gallus
 Mmp13ENSMUSG00000050578Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
MMP3 / P08254 / matrix metallopeptidase 3ENSG0000014996851
MMP10 / P09238 / matrix metallopeptidase 10ENSG0000016667050
MMP8 / P22894 / matrix metallopeptidase 8ENSG0000011811350
MMP27 / Q9H306 / matrix metallopeptidase 27ENSG0000013767548
MMP1 / P03956 / matrix metallopeptidase 1ENSG0000019661147
MMP12 / P39900 / matrix metallopeptidase 12ENSG0000026240646
MMP20 / O60882 / matrix metallopeptidase 20ENSG0000013767445
MMP24 / Q9Y5R2 / matrix metallopeptidase 24ENSG0000012596638
MMP16 / P51512 / matrix metallopeptidase 16ENSG0000015610338
MMP14 / P50281 / matrix metallopeptidase 14ENSG0000015722738
MMP15 / P51511 / matrix metallopeptidase 15ENSG0000010299637
MMP25 / Q9NPA2 / matrix metallopeptidase 25ENSG0000000851635
MMP17 / Q9ULZ9 / matrix metallopeptidase 17ENSG0000019859835
MMP11 / P24347 / matrix metallopeptidase 11ENSG0000009995333
MMP7 / P09237 / matrix metallopeptidase 7ENSG0000013767326


Protein motifs (from Interpro)
Interpro ID Name
 IPR000585  Hemopexin-like domain
 IPR001818  Peptidase M10, metallopeptidase
 IPR002477  Peptidoglycan binding-like
 IPR006026  Peptidase, metallopeptidase
 IPR018486  Hemopexin, conserved site
 IPR018487  Hemopexin-like repeats
 IPR021158  Peptidase M10A, cysteine switch, zinc binding site
 IPR021190  Peptidase M10A
 IPR024079  Metallopeptidase, catalytic domain superfamily
 IPR028711  Collagenase 3
 IPR033739  Peptidase M10A, catalytic domain
 IPR036365  PGBD-like superfamily
 IPR036375  Hemopexin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001958 endochondral ossification IEA
 biological_processGO:0003417 growth plate cartilage development IEA
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0022617 extracellular matrix disassembly IEA
 biological_processGO:0030282 bone mineralization IEA
 biological_processGO:0030574 collagen catabolic process IEA
 biological_processGO:0044267 cellular protein metabolic process IEA
 biological_processGO:0051216 cartilage development IEA
 biological_processGO:0060349 bone morphogenesis IDA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005615 extracellular space TAS
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0004222 metalloendopeptidase activity IEA
 molecular_functionGO:0004252 serine-type endopeptidase activity TAS
 molecular_functionGO:0005509 calcium ion binding IDA
 molecular_functionGO:0005518 collagen binding IDA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008237 metallopeptidase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Degradation of the extracellular matrix
Activation of Matrix Metalloproteinases
Assembly of collagen fibrils and other multimeric structures
RUNX2 regulates genes involved in cell migration


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000234 Head abnormality 
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 HP:0000670 Carious teeth 
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 HP:0000926 Platyspondyly 
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 HP:0000944 Abnormality of the metaphyses 
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 HP:0001270 Motor retardation 
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001376 Decreased mobility of joints 
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 HP:0001377 Limited elbow extension 
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 HP:0001385 Hip dysplasia 
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0002515 Waddling gait 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002651 Spondyloepimetaphyseal dysplasia 
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0002758 Osteoarthritis 
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 HP:0002812 Coxa vara 
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 HP:0002814 Abnormality of the lower limbs "An abnormality of the legs." [HPO:curators]
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 HP:0002857 Genu valgum 
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 HP:0002869 Flared iliac wings 
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 HP:0002970 Genu varum 
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 HP:0002980 Femoral bowing "Bowing (abnormal curvature) of the femur." [HPO:curators]
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 HP:0002982 Tibial bowing "A developmental defect with posteromedial tibial angulation." [HPO:curators]
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 HP:0002986 Radial bowing 
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 HP:0003015 Metaphyseal flaring "The presence of splayed (i.e.,flared) metaphyseal segments of the long bones." [HPO:curators]
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 HP:0003016 Metaphyseal widening "Abnormal widening of the metaphyseal regions of long bones." [HPO:curators]
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 HP:0003021 Metaphyseal cupping "Metaphyseal cupping refers to an inward bulging of the metaphyseal profile giving the metaphysis a cup-like appearance." [HPO:curators]
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 HP:0003031 Ulnar bowing "Bending of the diaphysis (shaft) of the ulna, usually in the convex posterior direction." [HPO:curators]
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 HP:0003071 Flattened epiphyses 
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 HP:0003307 Hyperlordosis 
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 HP:0003498 Short stature, disproportionate 
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 HP:0004039 Abnormality of ulnar metaphysis 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004349 Reduced bone mineral density "A reduction of bone mineral density, that is, of the amount of matter per cubic centimeter of bones." [HPO:curators]
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 HP:0004566 Pear-shaped vertebrae 
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 HP:0004979 Sclerotic, widened metaphyses 
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 HP:0005871 Metaphyseal chondrodysplasia 
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 HP:0005930 Abnormality of the epiphyses 
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 HP:0006385 Short lower limbs 
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 HP:0006409 Progressive leg bowing 
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 HP:0006487 Bowing of the long bones 
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 HP:0006501 Aplasia/Hypoplasia of the radius "A small/hypoplastic or absent/aplastic radius." [HPO:curators]
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 HP:0006603 Flared, irregular rib ends 
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 HP:0008476 Irregular sclerotic endplates 
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 HP:0008905 Rhizomelic short stature 
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 HP:0010585 Small epiphyses 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000136943 CTSV / O60911 / cathepsin V  / reaction
 ENSG00000175899 A2M / P01023 / alpha-2-macroglobulin  / reaction / complex
 ENSG00000188770 OPTC / Q9UBM4 / opticin  / reaction
 ENSG00000142798 HSPG2 / P98160 / heparan sulfate proteoglycan 2  / reaction
 ENSG00000138829 FBN2 / P35556 / fibrillin 2  / reaction
 ENSG00000166147 FBN1 / P35555 / fibrillin 1  / reaction
 ENSG00000122194 PLG / P00747 / plasminogen  / reaction
 ENSG00000157227 MMP14 / P50281 / matrix metallopeptidase 14  / reaction
 ENSG00000204983 PRSS1 / P07477 / serine protease 1  / reaction
 ENSG00000143387 CTSK / P43235 / cathepsin K  / reaction
 ENSG00000149968 MMP3 / P08254 / matrix metallopeptidase 3  / reaction






 

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