ENSG00000196611


Homo sapiens

Features
Gene ID: ENSG00000196611
  
Biological name :MMP1
  
Synonyms : matrix metallopeptidase 1 / MMP1 / P03956
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: -1
Band: q22.2
Gene start: 102789920
Gene end: 102798160
  
Corresponding Affymetrix probe sets: 204475_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000322788
NCBI entrez gene - 4312     See in Manteia.
OMIM - 120353
RefSeq - NM_002421
RefSeq - NM_001145938
RefSeq Peptide - NP_001139410
RefSeq Peptide - NP_002412
swissprot - P03956
Ensembl - ENSG00000196611
  
Related genetic diseases (OMIM): 226600 - {Epidermolysis bullosa dystrophica, autosomal recessive, modifier of}, 226600
  606963 - COPD, rate of decline of lung function in, 606963
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000019061Gallus gallus
 Mmp1aENSMUSG00000043089Mus musculus
 Mmp1bENSMUSG00000041620Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
MMP8 / P22894 / matrix metallopeptidase 8ENSG0000011811357
MMP3 / P08254 / matrix metallopeptidase 3ENSG0000014996854
MMP10 / P09238 / matrix metallopeptidase 10ENSG0000016667052
MMP12 / P39900 / matrix metallopeptidase 12ENSG0000026240649
MMP27 / Q9H306 / matrix metallopeptidase 27ENSG0000013767549
MMP13 / P45452 / matrix metallopeptidase 13ENSG0000013774548
MMP20 / O60882 / matrix metallopeptidase 20ENSG0000013767444
MMP24 / Q9Y5R2 / matrix metallopeptidase 24ENSG0000012596641
MMP15 / P51511 / matrix metallopeptidase 15ENSG0000010299639
MMP16 / P51512 / matrix metallopeptidase 16ENSG0000015610339
MMP14 / P50281 / matrix metallopeptidase 14ENSG0000015722738
MMP11 / P24347 / matrix metallopeptidase 11ENSG0000009995336
MMP17 / Q9ULZ9 / matrix metallopeptidase 17ENSG0000019859834
MMP25 / Q9NPA2 / matrix metallopeptidase 25ENSG0000000851634
MMP7 / P09237 / matrix metallopeptidase 7ENSG0000013767327


Protein motifs (from Interpro)
Interpro ID Name
 IPR000585  Hemopexin-like domain
 IPR001818  Peptidase M10, metallopeptidase
 IPR002477  Peptidoglycan binding-like
 IPR006026  Peptidase, metallopeptidase
 IPR018486  Hemopexin, conserved site
 IPR018487  Hemopexin-like repeats
 IPR021158  Peptidase M10A, cysteine switch, zinc binding site
 IPR021190  Peptidase M10A
 IPR024079  Metallopeptidase, catalytic domain superfamily
 IPR033739  Peptidase M10A, catalytic domain
 IPR036365  PGBD-like superfamily
 IPR036375  Hemopexin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis TAS
 biological_processGO:0016032 viral process IEA
 biological_processGO:0019221 cytokine-mediated signaling pathway TAS
 biological_processGO:0022617 extracellular matrix disassembly TAS
 biological_processGO:0030574 collagen catabolic process IEA
 biological_processGO:0032461 positive regulation of protein oligomerization IDA
 biological_processGO:0044267 cellular protein metabolic process TAS
 biological_processGO:0050900 leukocyte migration TAS
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0004175 endopeptidase activity IDA
 molecular_functionGO:0004222 metalloendopeptidase activity IDA
 molecular_functionGO:0004252 serine-type endopeptidase activity TAS
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008237 metallopeptidase activity IEA
 molecular_functionGO:0008270 zinc ion binding TAS
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Degradation of the extracellular matrix
Activation of Matrix Metalloproteinases
Basigin interactions
Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
Interleukin-4 and Interleukin-13 signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000498 Blepharitis "Inflammation of the eyelids." [HPO:curators]
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 HP:0000529 Progressive visual loss 
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 HP:0000656 Ectropion "An abnormal turning outward of the lower eyelid." [HPO:sdoelken]
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 HP:0000670 Carious teeth 
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 HP:0000823 Delayed puberty 
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0000989 Pruritus "Pruritus is an itch or a sensation that makes a person want to scratch. This term refers to an abnormally increased disposition to experience pruritus." [HPO:curators]
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 HP:0001056 Milia 
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 HP:0001371 Contractures 
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 HP:0001644 Dilated cardiomyopathy 
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 HP:0001802 Absent toenails 
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 HP:0001817 Absent fingernails 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002019 Constipation 
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 HP:0002043 Esophageal stricture 
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 HP:0003073 Hypoalbuminemia "Reduction in the concentration of albumin in the blood." [HPO:curators]
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 HP:0004057 Mitten deformity 
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 HP:0004334 Dermal atrophy "Partial or complete wasting (atrophy) of the skin." [HPO:curators]
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 HP:0004378 Abnormality of the anus "Abnormality of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
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 HP:0004552 scarring alopecia of scalp 
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 HP:0005505 Refractory anemia 
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 HP:0006510 Chronic obstructive pulmonary disease 
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 HP:0006739 Squamous cell carcinoma of the skin "Squamous cell carcinoma of the skin is a malignant tumor of squamous epithelium." [HPO:curators]
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 HP:0008066 Abnormal blistering of the skin 
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 HP:0010296 Ankyloglossia "Short or anteriorly attached lingual frenulum associated with limited mobility of the tongue." [pmid:19125428]
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 HP:0011457 Loss of eyelashes "This term refers to the loss of eyelashes that were previously present." [HPO:probinson]
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 HP:0200020 Corneal erosions "Erosions or Abbrasions of the cornea s outermost layer of epithelial cells." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000172270 BSG / P35613 / basigin (Ok blood group)  / reaction / complex
 ENSG00000116962 NID1 / P14543 / nidogen 1  / reaction
 ENSG00000087245 MMP2 / P08253 / matrix metallopeptidase 2  / reaction
 ENSG00000175899 A2M / P01023 / alpha-2-macroglobulin  / reaction / complex
 ENSG00000100985 MMP9 / P14780 / matrix metallopeptidase 9  / reaction
 ENSG00000167244 IGF2 / P01344 / insulin like growth factor 2  / reaction
 ENSG00000017427 IGF1 / P05019 / insulin like growth factor 1  / reaction
 ENSG00000099769 IGFALS / P35858 / insulin like growth factor binding protein acid labile subunit  / reaction
 ENSG00000146674 IGFBP3 / P17936 / insulin like growth factor binding protein 3  / reaction






 

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