ENSG00000107611


Homo sapiens

Features
Gene ID: ENSG00000107611
  
Biological name :CUBN
  
Synonyms : cubilin / CUBN / O60494
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: -1
Band: p13
Gene start: 16823964
Gene end: 17129831
  
Corresponding Affymetrix probe sets: 206775_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000391830
Ensembl peptide - ENSP00000415970
Ensembl peptide - ENSP00000367054
Ensembl peptide - ENSP00000367064
NCBI entrez gene - 8029     See in Manteia.
OMIM - 602997
RefSeq - NM_001081
RefSeq - XM_011519708
RefSeq Peptide - NP_001072
swissprot - B0YIZ6
swissprot - O60494
swissprot - Q5JQ33
swissprot - H7C480
Ensembl - ENSG00000107611
  
Related genetic diseases (OMIM): 261100 - Megaloblastic anemia-1, Finnish type, 261100
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cubnENSDARG00000087013Danio rerio
 CUBNENSGALG00000008704Gallus gallus
 CubnENSMUSG00000026726Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TLL2 / Q9Y6L7 / tolloid like 2ENSG000000955878
BMP1 / P13497 / bone morphogenetic protein 1ENSG000001684878
TLL1 / O43897 / tolloid like 1ENSG000000382958
MFRP / Q9BY79 / membrane frizzled-related proteinENSG000002357184
CDCP2 / Q5VXM1 / CUB domain containing protein 2ENSG000001572114
NETO2 / Q8NC67 / neuropilin and tolloid like 2ENSG000001712084
PCOLCE / Q15113 / procollagen C-endopeptidase enhancerENSG000001063334
NETO1 / Q8TDF5 / neuropilin and tolloid like 1ENSG000001663423
Q9UKZ9 / PCOLCE2 / procollagen C-endopeptidase enhancer 2ENSG000001637103


Protein motifs (from Interpro)
Interpro ID Name
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000742  EGF-like domain
 IPR000859  CUB domain
 IPR001881  EGF-like calcium-binding domain
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR013032  EGF-like, conserved site
 IPR018097  EGF-like calcium-binding, conserved site
 IPR024731  EGF domain
 IPR035914  Spermadhesin, CUB domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001894 tissue homeostasis NAS
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0006897 endocytosis IEA
 biological_processGO:0006898 receptor-mediated endocytosis NAS
 biological_processGO:0008202 steroid metabolic process IEA
 biological_processGO:0008203 cholesterol metabolic process IEA
 biological_processGO:0009235 cobalamin metabolic process TAS
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0015889 cobalamin transport TAS
 biological_processGO:0034384 high-density lipoprotein particle clearance TAS
 biological_processGO:0042359 vitamin D metabolic process TAS
 biological_processGO:0042953 lipoprotein transport IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005765 lysosomal membrane IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005903 brush border IEA
 cellular_componentGO:0005905 clathrin-coated pit IEA
 cellular_componentGO:0010008 endosome membrane TAS
 cellular_componentGO:0016020 membrane TAS
 cellular_componentGO:0016324 apical plasma membrane ISS
 cellular_componentGO:0030139 endocytic vesicle IEA
 cellular_componentGO:0031232 extrinsic component of external side of plasma membrane NAS
 cellular_componentGO:0031526 brush border membrane NAS
 cellular_componentGO:0043202 lysosomal lumen TAS
 cellular_componentGO:0045177 apical part of cell IEA
 cellular_componentGO:0070062 extracellular exosome IDA
 molecular_functionGO:0005215 transporter activity TAS
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008144 drug binding ISS
 molecular_functionGO:0031419 cobalamin binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IDA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Cobalamin (Cbl, vitamin B12) transport and metabolism
Vitamin D (calciferol) metabolism
Defective AMN causes hereditary megaloblastic anemia 1
Defective CUBN causes hereditary megaloblastic anemia 1
HDL clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000093 Proteinuria 
Show

 HP:0000726 Dementia 
Show

 HP:0001289 Confusion "Lack of clarity and coherence of thought, perception, understanding, or action." [HPO:curators]
Show

 HP:0001889 Megaloblastic anemia 
Show

 HP:0003401 Paresthesia "Abnormal sensations such as tingling, pricking, or numbness of the skin with no apparent physical cause." [HPO:curators]
Show

 HP:0003474 Sensory impairment 
Show

 HP:0011463 Childhood onset "Onset of disease at the age of between 1 and 5 years." [DDD:hfirth]
Show

 HP:0200118 Malabsorption of Vitamin B12 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000118137 APOA1 / P02647 / apolipoprotein A1  / complex / reaction
 ENSG00000081479 LRP2 / P98164 / LDL receptor related protein 2  / reaction
 ENSG00000134812 GIF / P27352 / gastric intrinsic factor  / reaction / complex
 ENSG00000145321 GC / P02774 / GC, vitamin D binding protein  / complex / reaction
 ENSG00000166126 AMN / Q9BXJ7 / amnion associated transmembrane protein  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr