ENSG00000081479


Homo sapiens

Features
Gene ID: ENSG00000081479
  
Biological name :LRP2
  
Synonyms : LDL receptor related protein 2 / LRP2 / P98164
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: q31.1
Gene start: 169127109
Gene end: 169362685
  
Corresponding Affymetrix probe sets: 205710_at (Human Genome U133 Plus 2.0 Array)   230863_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000409813
Ensembl peptide - ENSP00000263816
NCBI entrez gene - 4036     See in Manteia.
OMIM - 600073
RefSeq - XM_011511184
RefSeq - NM_004525
RefSeq - XM_011511183
RefSeq Peptide - NP_004516
swissprot - P98164
swissprot - E9PC35
Ensembl - ENSG00000081479
  
Related genetic diseases (OMIM): 222448 - Donnai-Barrow syndrome, 222448
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lrp2aENSDARG00000102506Danio rerio
 LRP2ENSGALG00000010858Gallus gallus
 Lrp2ENSMUSG00000027070Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LRP1 / Q07954 / LDL receptor related protein 1ENSG0000012338436
LRP1B / Q9NZR2 / LDL receptor related protein 1BENSG0000016870234
LRP4 / O75096 / LDL receptor related protein 4ENSG0000013456915
LRP6 / O75581 / LDL receptor related protein 6ENSG0000007001811
LRP5 / O75197 / LDL receptor related protein 5ENSG0000016233711
LRP8 / Q14114 / LDL receptor related protein 8ENSG000001571937
VLDLR / P98155 / very low density lipoprotein receptorENSG000001478527
LDLR / P01130 / low density lipoprotein receptorENSG000001301646


Protein motifs (from Interpro)
Interpro ID Name
 IPR000033  LDLR class B repeat
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000742  EGF-like domain
 IPR001881  EGF-like calcium-binding domain
 IPR002172  Low-density lipoprotein (LDL) receptor class A repeat
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR013032  EGF-like, conserved site
 IPR018097  EGF-like calcium-binding, conserved site
 IPR019825  Legume lectin, beta chain, Mn/Ca-binding site
 IPR023415  Low-density lipoprotein (LDL) receptor class A, conserved site
 IPR026823  Complement Clr-like EGF domain
 IPR036055  LDL receptor-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001523 retinoid metabolic process TAS
 biological_processGO:0001843 neural tube closure IEA
 biological_processGO:0003139 secondary heart field specification IEA
 biological_processGO:0003148 outflow tract septum morphogenesis IEA
 biological_processGO:0003223 ventricular compact myocardium morphogenesis IEA
 biological_processGO:0003281 ventricular septum development IEA
 biological_processGO:0006629 lipid metabolic process TAS
 biological_processGO:0006766 vitamin metabolic process IEA
 biological_processGO:0006897 endocytosis TAS
 biological_processGO:0006898 receptor-mediated endocytosis IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0007507 heart development IEA
 biological_processGO:0007605 sensory perception of sound ISS
 biological_processGO:0008283 cell proliferation IEA
 biological_processGO:0008584 male gonad development IEA
 biological_processGO:0030001 metal ion transport IDA
 biological_processGO:0030514 negative regulation of BMP signaling pathway IEA
 biological_processGO:0030900 forebrain development IEA
 biological_processGO:0035904 aorta development IEA
 biological_processGO:0042359 vitamin D metabolic process TAS
 biological_processGO:0042953 lipoprotein transport IEA
 biological_processGO:0050769 positive regulation of neurogenesis IEA
 biological_processGO:0060068 vagina development IEA
 biological_processGO:0060976 coronary vasculature development IEA
 biological_processGO:0060982 coronary artery morphogenesis IEA
 biological_processGO:0061024 membrane organization TAS
 biological_processGO:0061156 pulmonary artery morphogenesis IEA
 biological_processGO:0070447 positive regulation of oligodendrocyte progenitor proliferation IEA
 biological_processGO:0140058 neuron projection arborization IEA
 biological_processGO:1904447 folate import across plasma membrane IEA
 biological_processGO:1905167 positive regulation of lysosomal protein catabolic process ISS
 cellular_componentGO:0005764 lysosome TAS
 cellular_componentGO:0005765 lysosomal membrane HDA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005903 brush border IEA
 cellular_componentGO:0005905 clathrin-coated pit IEA
 cellular_componentGO:0009897 external side of plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016324 apical plasma membrane ISS
 cellular_componentGO:0030139 endocytic vesicle IEA
 cellular_componentGO:0030424 axon ISS
 cellular_componentGO:0030425 dendrite ISS
 cellular_componentGO:0030665 clathrin-coated vesicle membrane TAS
 cellular_componentGO:0031526 brush border membrane IEA
 cellular_componentGO:0031904 endosome lumen IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0043235 receptor complex IDA
 cellular_componentGO:0045177 apical part of cell IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005041 low-density lipoprotein particle receptor activity TAS
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008144 drug binding ISS
 molecular_functionGO:0017124 SH3 domain binding IEA
 molecular_functionGO:0035258 steroid hormone receptor binding ISS
 molecular_functionGO:0042954 lipoprotein transporter activity TAS
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051087 chaperone binding ISS


Pathways (from Reactome)
Pathway description
Vitamin D (calciferol) metabolism
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis
Retinoid metabolism and transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000093 Proteinuria 
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000260 Wide anterior fontanel "Enlargement of the anterior fontanelle with respect to age-dependent norms." [HPO:curators]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
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 HP:0000349 Widow s peak 
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000455 Broad nasal tip 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000520 Proptosis 
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 HP:0000529 Progressive visual loss 
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 HP:0000541 Detached retina 
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 HP:0000545 Myopia 
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 HP:0000556 Retinal dystrophy 
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 HP:0000612 Iris coloboma "A `coloboma` (HP:0000589) of the `iris` (FMA:58235)." [HPO:probinson]
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 HP:0000776 Diaphragmatic hernia "Diaphragmatic hernia is the result of a developmental defect causing an abnormal opening in the diaphragm, through which abdominal organs (stomach, spleen, liver, and intestines) can protrude into the thoracic cavity. This usually causes respiratory distress in the newborn period." [HPO:curators]
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 HP:0000813 Bicornuate uterus 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001338 Partial agenesis of the corpus callosum "A partial failure of the development of the corpus callosum." [HPO:curators]
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0001539 Omphalocele 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0002566 Intestinal malrotation "An abnormality of the intestinal rotation and fixation that normally occurs during the development of the gut. This can lead to volvulus, or twisting of the intestine that causes obstruction and necrosis." [HPO:curators]
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 HP:0003126 Low-molecular-weight proteinuria 
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0005574 Non-acidotic proximal tubulopathy 
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 HP:0007370 Aplasia/Hypoplasia of the corpus callosum "Absence or underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0007676 Hypoplasia of the iris 
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 HP:0009110 Diaphragmatic eventration "A congenital failure of muscular development of part or all of one or both hemidiaphragms, resulting in superior displacement of abdominal viscera and altered lung development." [HPO:curators]
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 HP:0011003 Severe Myopia 
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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 HP:0100876 Infra-orbital crease "Skin crease extending from below the inner canthus laterally along the malar process of the maxilla and zygoma." [pmid:19125427]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000145321 GC / P02774 / GC, vitamin D binding protein  / reaction
 ENSG00000130203 APOE / P02649 / apolipoprotein E  / reaction
 ENSG00000107611 CUBN / O60494 / cubilin  / reaction
 ENSG00000153071 DAB2 / P98082 / DAB2, clathrin adaptor protein  / reaction / complex






 

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