ENSG00000134569


Homo sapiens

Features
Gene ID: ENSG00000134569
  
Biological name :LRP4
  
Synonyms : LDL receptor related protein 4 / LRP4 / O75096
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: -1
Band: p11.2
Gene start: 46856868
Gene end: 46918642
  
Corresponding Affymetrix probe sets: 212850_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000434763
Ensembl peptide - ENSP00000367888
NCBI entrez gene - 4038     See in Manteia.
OMIM - 604270
RefSeq - XM_017017734
RefSeq - NM_002334
RefSeq - XM_011520103
RefSeq Peptide - NP_002325
swissprot - O75096
swissprot - E9PNJ5
Ensembl - ENSG00000134569
  
Related genetic diseases (OMIM): 212780 - Cenani-Lenz syndactyly syndrome, 212780
  614305 - Sclerosteosis 2, 614305
  616304 - ?Myasthenic syndrome, congenital, 17, 616304
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CABZ01071171.1ENSDARG00000116353Danio rerio
 LRP4ENSGALG00000032181Gallus gallus
 Lrp4ENSMUSG00000027253Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LRP1 / Q07954 / LDL receptor related protein 1ENSG0000012338436
LRP2 / P98164 / LDL receptor related protein 2ENSG0000008147936
LRP1B / Q9NZR2 / LDL receptor related protein 1BENSG0000016870233
LRP6 / O75581 / LDL receptor related protein 6ENSG0000007001832
LRP5 / O75197 / LDL receptor related protein 5ENSG0000016233731
LRP8 / Q14114 / LDL receptor related protein 8ENSG0000015719316
LDLR / P01130 / low density lipoprotein receptorENSG0000013016416
VLDLR / P98155 / very low density lipoprotein receptorENSG0000014785216


Protein motifs (from Interpro)
Interpro ID Name
 IPR000033  LDLR class B repeat
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000742  EGF-like domain
 IPR001881  EGF-like calcium-binding domain
 IPR002172  Low-density lipoprotein (LDL) receptor class A repeat
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR013032  EGF-like, conserved site
 IPR018097  EGF-like calcium-binding, conserved site
 IPR023415  Low-density lipoprotein (LDL) receptor class A, conserved site
 IPR026823  Complement Clr-like EGF domain
 IPR030799  Low-density lipoprotein receptor-related protein 4
 IPR036055  LDL receptor-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001822 kidney development IDA
 biological_processGO:0001932 regulation of protein phosphorylation IEA
 biological_processGO:0001942 hair follicle development IEA
 biological_processGO:0006897 endocytosis IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0008104 protein localization IEA
 biological_processGO:0009953 dorsal/ventral pattern formation IEA
 biological_processGO:0009954 proximal/distal pattern formation IEA
 biological_processGO:0016055 Wnt signaling pathway IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030178 negative regulation of Wnt signaling pathway IEA
 biological_processGO:0030279 negative regulation of ossification IMP
 biological_processGO:0030326 embryonic limb morphogenesis IEA
 biological_processGO:0030509 BMP signaling pathway IEA
 biological_processGO:0042475 odontogenesis of dentin-containing tooth IEA
 biological_processGO:0042733 embryonic digit morphogenesis IEA
 biological_processGO:0043113 receptor clustering IEA
 biological_processGO:0044332 Wnt signaling pathway involved in dorsal/ventral axis specification IBA
 biological_processGO:0048513 animal organ development IEA
 biological_processGO:0048813 dendrite morphogenesis IEA
 biological_processGO:0048856 anatomical structure development IEA
 biological_processGO:0050731 positive regulation of peptidyl-tyrosine phosphorylation IEA
 biological_processGO:0050771 negative regulation of axonogenesis IEA
 biological_processGO:0050808 synapse organization IEA
 biological_processGO:0051124 synaptic growth at neuromuscular junction IEA
 biological_processGO:0051290 protein heterotetramerization IEA
 biological_processGO:0060173 limb development IDA
 biological_processGO:0060828 regulation of canonical Wnt signaling pathway IEA
 biological_processGO:0071340 skeletal muscle acetylcholine-gated channel clustering IEA
 biological_processGO:0090090 negative regulation of canonical Wnt signaling pathway IEA
 biological_processGO:0097104 postsynaptic membrane assembly IEA
 biological_processGO:0097105 presynaptic membrane assembly IEA
 biological_processGO:1901631 positive regulation of presynaptic membrane organization IEA
 biological_processGO:1904395 positive regulation of skeletal muscle acetylcholine-gated channel clustering IEA
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0014069 postsynaptic density IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016600 flotillin complex IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0031594 neuromuscular junction IEA
 cellular_componentGO:0043025 neuronal cell body IEA
 cellular_componentGO:0043235 receptor complex IBA
 cellular_componentGO:0097060 synaptic membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0017147 Wnt-protein binding IBA
 molecular_functionGO:0030971 receptor tyrosine kinase binding IEA
 molecular_functionGO:0034185 apolipoprotein binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0042813 Wnt-activated receptor activity IBA
 molecular_functionGO:0097110 scaffold protein binding IEA


Pathways (from Reactome)
Pathway description
ECM proteoglycans


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000089 Renal hypoplasia 
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 HP:0000098 Increased body height 
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 HP:0000104 Renal agenesis 
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000322 Short philtrum 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000366 Abnormality of the nose 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000411 Protruding ears 
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 HP:0000444 Beaked nose 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000520 Proptosis 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000656 Ectropion "An abnormal turning outward of the lower eyelid." [HPO:sdoelken]
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000682 Abnormality of dental enamel "An abnormality of the dental enamel, which is the external layer of the teeth, being a highly mineralized substance consisting primarily of hydroxylapatite." [HPO:curators]
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 HP:0000772 Abnormality of the ribs 
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 HP:0000821 Hypothyroidism 
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 HP:0001159 Syndactyly "Webbing or fusion of the fingers or toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers or toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001163 Abnormality of the metacarpal bones 
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 HP:0001233 2-3 finger syndactyly "`Syndactyly` (HP:0001159) with fusion of fingers two and three." [HPO:sdoelken]
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 HP:0001265 Hyporeflexia 
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 HP:0001601 Laryngomalacia 
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 HP:0001770 Toe syndactyly "Webbing or fusion of the toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001802 Absent toenails 
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 HP:0001817 Absent fingernails 
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 HP:0001849 Oligodactyly (feet) "A developmental defect resulting in the presence of fewer than the normal number of toes." [HPO:curators]
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002164 Nail dysplasia 
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 HP:0002355 Difficulty walking 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002705 High, narrow palate "The presence of a high and narrow palate." [HPO:curators]
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 HP:0002827 Dislocated hips 
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 HP:0002974 Radioulnar synostosis "An abnormal osseous union (fusion) between the radius and the ulna." [HPO:curators]
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 HP:0002983 Micromelia 
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 HP:0002984 Hypoplasia of the radius "Underdevelopment of the radius." [HPO:curators]
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 HP:0003022 Hypoplasia of the ulna "Underdevelopment of the ulna." [HPO:curators]
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 HP:0003042 Elbow dislocation "A dislocation affecting the elbow joint, where the radius, ulna, and humerus meet." [HPO:curators]
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 HP:0003103 Abnormality of cortical bone "An abnormality of cortical bone (also known as compact bone), which forms the dense surface of bones." [HPO:curators]
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0003312 Abnormal form of the vertebral bodies 
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 HP:0003577 Onset at birth 
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 HP:0004493 Craniofacial hyperostosis "Hyperostosis refers to a localized bone overgrowth process (as opposed to sclerosis, which refers to a generalized disturbance with increased bone density). This term is used for excessive growth of the craniofacial bones." [HPO:curators]
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 HP:0004736 Ectopic kidney with fusion 
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 HP:0005019 Diaphyseal thickening 
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 HP:0005048 fusion of carpal bones, especially capitate and hamate 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0007477 Abnormal dermatoglyphics "An abnormality of dermatoglyphs (fingerprints), which are present on fingers, palms, toes, and soles." [HPO:curators]
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 HP:0008678 Renal hypoplasia/aplasia 
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 HP:0009381 Hypoplastic/small fingers 
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 HP:0009778 Hypoplastic/small thumb 
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 HP:0009838 Curved distal phalanges of the hand 
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 HP:0010554 Cutaneous syndactyly of the fingers "Webbing or fusion of the fingers involving soft parts only." [HPO:curators]
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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 HP:0011001 Increased bone mineral density "An abnormal increase of bone mineral density, that is, of the amount of matter per cubic centimeter of bones which is often refered to as osteosclerosis. Osteosclerosis can be detected on radiological examination as an increased whiteness (density) of affected bones." [HPO:curators]
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 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0100798 Fingernail dysplasia "An abnormality of the development of the fingernails." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000030304 MUSK / O15146 / muscle associated receptor tyrosine kinase  / complex
 ENSG00000188157 AGRN / agrin / O00468  / complex / reaction
 ENSG00000134569 LRP4 / O75096 / LDL receptor related protein 4  / complex






 

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