ENSG00000162337


Homo sapiens

Features
Gene ID: ENSG00000162337
  
Biological name :LRP5
  
Synonyms : LDL receptor related protein 5 / LRP5 / O75197
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: 1
Band: q13.2
Gene start: 68312609
Gene end: 68449275
  
Corresponding Affymetrix probe sets: 209468_at (Human Genome U133 Plus 2.0 Array)   229591_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000436652
Ensembl peptide - ENSP00000294304
Ensembl peptide - ENSP00000435315
NCBI entrez gene - 4041     See in Manteia.
OMIM - 603506
RefSeq - XM_011545031
RefSeq - NM_001291902
RefSeq - NM_002335
RefSeq - XM_005273994
RefSeq - XM_011545029
RefSeq - XM_011545030
RefSeq Peptide - NP_001278831
RefSeq Peptide - NP_002326
swissprot - H0YE98
swissprot - O75197
swissprot - E9PHY1
Ensembl - ENSG00000162337
  
Related genetic diseases (OMIM): 601813 - Exudative vitreoretinopathy 4, 601813
  144750 - Hyperostosis, endosteal, 144750
  607634 - Osteopetrosis, autosomal dominant 1, 607634
  259770 - Osteoporosis-pseudoglioma syndrome, 259770
  617875 - Polycystic liver disease 4 with or without kidney cysts, 617875
  601884 - [Bone mineral density variability 1], 601884
  607636 - van Buchem disease, type 2, 607636
  166710 - {Osteoporosis}, 166710
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lrp5ENSDARG00000006921Danio rerio
 LRP5ENSGALG00000029533Gallus gallus
 Lrp5ENSMUSG00000024913Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LRP6 / O75581 / LDL receptor related protein 6ENSG0000007001870
LRP4 / O75096 / LDL receptor related protein 4ENSG0000013456936
LRP1 / Q07954 / LDL receptor related protein 1ENSG0000012338433
LRP1B / Q9NZR2 / LDL receptor related protein 1BENSG0000016870232
LRP2 / P98164 / LDL receptor related protein 2ENSG0000008147932
LRP8 / Q14114 / LDL receptor related protein 8ENSG0000015719310
LDLR / P01130 / low density lipoprotein receptorENSG0000013016410
VLDLR / P98155 / very low density lipoprotein receptorENSG000001478529


Protein motifs (from Interpro)
Interpro ID Name
 IPR000033  LDLR class B repeat
 IPR000742  EGF-like domain
 IPR002172  Low-density lipoprotein (LDL) receptor class A repeat
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR017049  Low density lipoprotein receptor-related protein 5/6
 IPR023415  Low-density lipoprotein (LDL) receptor class A, conserved site
 IPR036055  LDL receptor-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001702 gastrulation with mouth forming second IEA
 biological_processGO:0001944 vasculature development IEA
 biological_processGO:0002053 positive regulation of mesenchymal cell proliferation IMP
 biological_processGO:0002076 osteoblast development IEA
 biological_processGO:0006007 glucose catabolic process IMP
 biological_processGO:0006897 endocytosis IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0008203 cholesterol metabolic process IEA
 biological_processGO:0008217 regulation of blood pressure IMP
 biological_processGO:0008284 positive regulation of cell proliferation IDA
 biological_processGO:0009314 response to radiation IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0016055 Wnt signaling pathway IDA
 biological_processGO:0033690 positive regulation of osteoblast proliferation IEA
 biological_processGO:0035019 somatic stem cell population maintenance IEA
 biological_processGO:0035108 limb morphogenesis IEA
 biological_processGO:0035426 extracellular matrix-cell signaling IEA
 biological_processGO:0042074 cell migration involved in gastrulation IEA
 biological_processGO:0042632 cholesterol homeostasis IMP
 biological_processGO:0042733 embryonic digit morphogenesis IEA
 biological_processGO:0042981 regulation of apoptotic process IEA
 biological_processGO:0043434 response to peptide hormone IEA
 biological_processGO:0044332 Wnt signaling pathway involved in dorsal/ventral axis specification IDA
 biological_processGO:0045600 positive regulation of fat cell differentiation IMP
 biological_processGO:0045668 negative regulation of osteoblast differentiation IMP
 biological_processGO:0045840 positive regulation of mitotic nuclear division IDA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0046849 bone remodeling IEA
 biological_processGO:0046850 regulation of bone remodeling IEA
 biological_processGO:0048539 bone marrow development IMP
 biological_processGO:0051091 positive regulation of DNA-binding transcription factor activity IEA
 biological_processGO:0060033 anatomical structure regression IEA
 biological_processGO:0060042 retina morphogenesis in camera-type eye IMP
 biological_processGO:0060070 canonical Wnt signaling pathway IMP
 biological_processGO:0060348 bone development IEA
 biological_processGO:0060349 bone morphogenesis IMP
 biological_processGO:0060444 branching involved in mammary gland duct morphogenesis IEA
 biological_processGO:0060603 mammary gland duct morphogenesis IEA
 biological_processGO:0060612 adipose tissue development IMP
 biological_processGO:0060764 cell-cell signaling involved in mammary gland development IEA
 biological_processGO:0060828 regulation of canonical Wnt signaling pathway IMP
 biological_processGO:0061178 regulation of insulin secretion involved in cellular response to glucose stimulus IEA
 biological_processGO:0061299 retina vasculature morphogenesis in camera-type eye IEA
 biological_processGO:0061304 retinal blood vessel morphogenesis IMP
 biological_processGO:0071901 negative regulation of protein serine/threonine kinase activity IMP
 biological_processGO:1902262 apoptotic process involved in blood vessel morphogenesis IEA
 biological_processGO:1904886 beta-catenin destruction complex disassembly TAS
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0043235 receptor complex IDA
 cellular_componentGO:1990851 Wnt-Frizzled-LRP5/6 complex TAS
 cellular_componentGO:1990909 Wnt signalosome NAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0017147 Wnt-protein binding TAS
 molecular_functionGO:0042813 Wnt-activated receptor activity ISS
 molecular_functionGO:0071936 coreceptor activity involved in Wnt signaling pathway IPI
 molecular_functionGO:1904928 coreceptor activity involved in canonical Wnt signaling pathway NAS


Pathways (from Reactome)
Pathway description
TCF dependent signaling in response to WNT
Negative regulation of TCF-dependent signaling by WNT ligand antagonists
Disassembly of the destruction complex and recruitment of AXIN to the membrane
Regulation of FZD by ubiquitination
Misspliced LRP5 mutants have enhanced beta-catenin-dependent signaling
RNF mutants show enhanced WNT signaling and proliferation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
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 HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000523 Subcapsular cataracts 
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 HP:0000541 Detached retina 
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000667 Phthisis bulbi "Atrophy of the eyeball with blindness and decreased intraocular pressure due to end-stage intraocular disease." [HPO:curators]
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 HP:0000689 Dental malocclusion "Dental malocclusion refers to an abnormality of the occlusion, or alignment, of the teeth and the way the upper and lower teeth fit together, resulting in overcrowding of teeth or in abnormal bite patterns." [HPO:curators]
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 HP:0000772 Abnormality of the ribs 
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 HP:0000889 Abnormality of the clavicles "Any abnormality of the clavicles (collar bones)." [HPO:curators]
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 HP:0000925 Abnormality of the vertebral column "Any abnormality of the spine (vertebral column)." [HPO:curators]
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 HP:0000926 Platyspondyly 
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 HP:0000935 Thickened cortex of long bones "Abnormal thickening of the cortex of long bones." [HPO:curators]
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0001089 Iris atrophy 
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 HP:0001103 Abnormality of the macula 
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 HP:0001136 Retinal arteriolar tortuosity 
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 HP:0001147 Retinal exudates 
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
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 HP:0001382 Joint hypermobility "The ability of a joint to move beyond its normal range of motion." [HPO:curators]
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 HP:0001425 Heterogeneous 
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 HP:0001489 Vitreous detachment 
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 HP:0001493 Falciform retinal folds 
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 HP:0001507 Growth abnormality 
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 HP:0001518 Low birth weight 
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 HP:0001552 Barrel-shaped chest 
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 HP:0001622 Premature birth 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001732 Abnormality of the pancreas 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002027 Abdominal pain 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002239 Gastrointestinal hemorrhage 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002315 Headache "Cephalgia, or pain in the head originating from the cerebral vault." [HPO:curators]
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 HP:0002516 Increased intracranial pressure 
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 HP:0002617 Aneurysm 
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 HP:0002644 Abnormality of the pelvis "An abnormality of the bony pelvis (pelvic girdle); which is a ring of bones connecting the vertebral column to the femurs." [HPO:curators]
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 HP:0002659 Increased susceptibility to fractures "An abnormally increased tendency to fractures of bones caused by an abnormal reduction in bone strength that is generally associated with an increased risk of fracture." [HPO:sdoelken]
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 HP:0002684 Thickened calvaria "The presence of an abnormally thick calvaria." [HPO:curators]
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 HP:0002751 Kyphoscoliosis 
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 HP:0002756 Pathologic fracture "A pathologic fracture occurs when a bone breaks in an area that is weakened secondary to another disease process such as tumor, infection, and certain inherited bone disorders. A pathologic fracture can occur without a degree of trauma required to cause fracture in healthy bone." [HPO:curators]
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 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
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 HP:0003016 Metaphyseal widening "Abnormal widening of the metaphyseal regions of long bones." [HPO:curators]
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 HP:0003103 Abnormality of cortical bone "An abnormality of cortical bone (also known as compact bone), which forms the dense surface of bones." [HPO:curators]
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 HP:0003270 Abdominal distention "Enlargement or distention of the abdomen, which can be a secondary feature associated with a number of conditions such as bowel obstruction." [HPO:curators]
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 HP:0003312 Abnormal form of the vertebral bodies 
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 HP:0003418 Back pain 
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 HP:0003573 Increased total bilirubin 
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 HP:0003593 Early onset 
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 HP:0003677 Slow progression 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004425 Flattened forehead "An abnormally flat form of the forehead." [HPO:curators]
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 HP:0004437 Cranial hyperostosis "Excessive growth of the cranial bones." [HPO:curators]
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 HP:0004493 Craniofacial hyperostosis "Hyperostosis refers to a localized bone overgrowth process (as opposed to sclerosis, which refers to a generalized disturbance with increased bone density). This term is used for excessive growth of the craniofacial bones." [HPO:curators]
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 HP:0005019 Diaphyseal thickening 
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 HP:0005562 Multiple renal cysts 
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 HP:0005789 Osteosclerosis, diffuse symmetrical 
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 HP:0006174 Metacarpal diaphyseal endosteal sclerosis 
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 HP:0006557 Polycystic liver disease 
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 HP:0007663 Decreased central vision 
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 HP:0007685 Peripheral retinal avascularization 
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 HP:0007773 Vitreoretinal abnormalities 
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 HP:0007811 Horizontal pendular nystagmus "Nystagmus consisting of horizontal to-and-fro eye movements of equal velocity." [HPO:curators]
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 HP:0007902 Vitreous hemorrhage 
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 HP:0007917 Tractional retinal detachment 
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 HP:0008037 Absent anterior eye chamber 
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 HP:0008114 Metatarsal diaphyseal endosteal sclerosis "Osteosclerosis of the endosteal surface of the diaphyses (shafts) of the metatarsal bones." [HPO:curators]
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 HP:0008872 Feeding problems in infancy 
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 HP:0009733 Glioma "A type of brain or spinal tumor originating from a glial cell. Gliomas can be classified as 1) ependymomas, 2) astrocytomas (including glioblastoma multiforme), 3 oligodendrogliomas, and 4) mixed gliomas, such as oligoastrocytomas." [HPO:curators]
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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 HP:0011001 Increased bone mineral density "An abnormal increase of bone mineral density, that is, of the amount of matter per cubic centimeter of bones which is often refered to as osteosclerosis. Osteosclerosis can be detected on radiological examination as an increased whiteness (density) of affected bones." [HPO:curators]
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 HP:0011002 Osteopetrosis 
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 HP:0011342 Mild global developmental delay "A mild delay in the achievement of motor or mental milestones in the domains of development of a child." [DDD:hvfirth]
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 HP:0012802 Broad jaw "Bigonial distance (lower facial width) more than 2 SD above the mean (objective); or an apparently increased width of the lower jaw (mandible) when viewed from the front (subjective)." [HPO:probinson, pmid:19125436]
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 HP:0030490 Exudative vitreoretinopathy 
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 HP:0030666 Retinal neovascularization "In wound repair, neovascularization (NV) involves the sprouting of new vessels from pre-existent vessels to repair or replace damaged vessels. In the retina, NV is a response to ischemia. The NV adheres to the inner surface of the retina and outer surface of the vitreous. NV are deficient in tight junctions and hence leak plasma into surrounding tissue including the vitreous. Plasma causes the vitreous gel to degenerate, contract, and eventually collapse which pulls on the retina. Since retinal NV is adherent to both retina and vitreous, as the vitreous contracts the NV may be sheared resulting in vitreous hemorrhage or the NV may remain intact and pull the retina with the vitreous resulting in retinal elevation referred to as traction retinal detachment." [PMID:23329331]
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 HP:0100789 Torus palatinus "A bony protrusion present on the midline of the hard palate." [HPO:sdoelken]
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 HP:0100861 Vertebral body sclerosis "Increase in bone density of the vertebral body." [HPO:probinson]
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 HP:0100923 Clavicular sclerosis "An increase in bone density within the clavicula." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000131650 Q8NCW0 / KREMEN2 / kringle containing transmembrane protein 2  / reaction
 ENSG00000107984 DKK1 / O94907 / dickkopf WNT signaling pathway inhibitor 1  / reaction






 

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