ENSG00000130203


Homo sapiens

Features
Gene ID: ENSG00000130203
  
Biological name :APOE
  
Synonyms : APOE / apolipoprotein E / P02649
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: 1
Band: q13.32
Gene start: 44905754
Gene end: 44909393
  
Corresponding Affymetrix probe sets: 203381_s_at (Human Genome U133 Plus 2.0 Array)   203382_s_at (Human Genome U133 Plus 2.0 Array)   212884_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000410423
Ensembl peptide - ENSP00000413653
Ensembl peptide - ENSP00000413135
Ensembl peptide - ENSP00000252486
NCBI entrez gene - 348     See in Manteia.
OMIM - 107741
RefSeq - NM_000041
RefSeq - NM_001302688
RefSeq - NM_001302689
RefSeq - NM_001302690
RefSeq - NM_001302691
RefSeq Peptide - NP_001289618
RefSeq Peptide - NP_001289619
RefSeq Peptide - NP_001289620
RefSeq Peptide - NP_000032
RefSeq Peptide - NP_001289617
swissprot - A0A0S2Z3D5
swissprot - E9PEV4
swissprot - E7ERP7
swissprot - P02649
swissprot - H0Y7L5
Ensembl - ENSG00000130203
  
Related genetic diseases (OMIM): 104310 - Alzheimer disease-2, 104310
  617347 - Hyperlipoproteinemia, type III, 617347
  611771 - Lipoprotein glomerulopathy, 611771
  269600 - Sea-blue histiocyte disease, 269600
  603075 - {?Macular degeneration, age-related}, 603075
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 apoeaENSDARG00000102004Danio rerio
 apoebENSDARG00000040295Danio rerio
 ApoeENSMUSG00000002985Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000074  Apolipoprotein A/E


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000302 response to reactive oxygen species NAS
 biological_processGO:0001523 retinoid metabolic process TAS
 biological_processGO:0001937 negative regulation of endothelial cell proliferation IDA
 biological_processGO:0002021 response to dietary excess IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II TAS
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0006641 triglyceride metabolic process IMP
 biological_processGO:0006707 cholesterol catabolic process IBA
 biological_processGO:0006869 lipid transport IEA
 biological_processGO:0006874 cellular calcium ion homeostasis IEA
 biological_processGO:0006898 receptor-mediated endocytosis IDA
 biological_processGO:0006979 response to oxidative stress IEA
 biological_processGO:0007010 cytoskeleton organization TAS
 biological_processGO:0007186 G-protein coupled receptor signaling pathway IDA
 biological_processGO:0007263 nitric oxide mediated signal transduction IDA
 biological_processGO:0007271 synaptic transmission, cholinergic TAS
 biological_processGO:0007616 long-term memory IGI
 biological_processGO:0008202 steroid metabolic process IEA
 biological_processGO:0008203 cholesterol metabolic process IMP
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0010544 negative regulation of platelet activation IDA
 biological_processGO:0010873 positive regulation of cholesterol esterification IDA
 biological_processGO:0010875 positive regulation of cholesterol efflux IGI
 biological_processGO:0010877 lipid transport involved in lipid storage ISS
 biological_processGO:0010976 positive regulation of neuron projection development ISS
 biological_processGO:0010977 negative regulation of neuron projection development IDA
 biological_processGO:0015909 long-chain fatty acid transport IDA
 biological_processGO:0017038 protein import IDA
 biological_processGO:0019068 virion assembly IMP
 biological_processGO:0019433 triglyceride catabolic process IBA
 biological_processGO:0019934 cGMP-mediated signaling IDA
 biological_processGO:0030195 negative regulation of blood coagulation IDA
 biological_processGO:0030516 regulation of axon extension TAS
 biological_processGO:0030828 obsolete positive regulation of cGMP biosynthetic process IDA
 biological_processGO:0031102 neuron projection regeneration IBA
 biological_processGO:0032269 negative regulation of cellular protein metabolic process IGI
 biological_processGO:0032462 regulation of protein homooligomerization IDA
 biological_processGO:0032489 regulation of Cdc42 protein signal transduction IDA
 biological_processGO:0032805 positive regulation of low-density lipoprotein particle receptor catabolic process IDA
 biological_processGO:0033344 cholesterol efflux IDA
 biological_processGO:0033700 phospholipid efflux IDA
 biological_processGO:0034371 chylomicron remodeling TAS
 biological_processGO:0034372 very-low-density lipoprotein particle remodeling IGI
 biological_processGO:0034374 low-density lipoprotein particle remodeling IEA
 biological_processGO:0034375 high-density lipoprotein particle remodeling TAS
 biological_processGO:0034378 chylomicron assembly TAS
 biological_processGO:0034380 high-density lipoprotein particle assembly IDA
 biological_processGO:0034382 chylomicron remnant clearance IMP
 biological_processGO:0034384 high-density lipoprotein particle clearance IDA
 biological_processGO:0034447 very-low-density lipoprotein particle clearance IMP
 biological_processGO:0035641 locomotory exploration behavior IMP
 biological_processGO:0042157 lipoprotein metabolic process IEA
 biological_processGO:0042158 lipoprotein biosynthetic process IEA
 biological_processGO:0042159 lipoprotein catabolic process IBA
 biological_processGO:0042311 vasodilation IEA
 biological_processGO:0042632 cholesterol homeostasis IGI
 biological_processGO:0042982 amyloid precursor protein metabolic process IDA
 biological_processGO:0043085 positive regulation of catalytic activity IEA
 biological_processGO:0043407 negative regulation of MAP kinase activity IDA
 biological_processGO:0043524 negative regulation of neuron apoptotic process IBA
 biological_processGO:0043537 negative regulation of blood vessel endothelial cell migration IDA
 biological_processGO:0043687 post-translational protein modification TAS
 biological_processGO:0043691 reverse cholesterol transport IDA
 biological_processGO:0044267 cellular protein metabolic process TAS
 biological_processGO:0044794 positive regulation by host of viral process IMP
 biological_processGO:0045541 negative regulation of cholesterol biosynthetic process IDA
 biological_processGO:0045807 positive regulation of endocytosis IDA
 biological_processGO:0046889 positive regulation of lipid biosynthetic process IDA
 biological_processGO:0046907 intracellular transport TAS
 biological_processGO:0048168 regulation of neuronal synaptic plasticity TAS
 biological_processGO:0048844 artery morphogenesis IEA
 biological_processGO:0050728 negative regulation of inflammatory response IEA
 biological_processGO:0051000 positive regulation of nitric-oxide synthase activity IDA
 biological_processGO:0051044 positive regulation of membrane protein ectodomain proteolysis IGI
 biological_processGO:0051246 regulation of protein metabolic process IGI
 biological_processGO:0051651 maintenance of location in cell IEA
 biological_processGO:0055088 lipid homeostasis IEA
 biological_processGO:0055089 fatty acid homeostasis IDA
 biological_processGO:0060999 positive regulation of dendritic spine development IDA
 biological_processGO:0061771 response to caloric restriction IGI
 biological_processGO:0070328 triglyceride homeostasis ISS
 biological_processGO:0072358 cardiovascular system development IEA
 biological_processGO:0090090 negative regulation of canonical Wnt signaling pathway IGI
 biological_processGO:0090181 regulation of cholesterol metabolic process IGI
 biological_processGO:0090209 negative regulation of triglyceride metabolic process IEA
 biological_processGO:0097006 regulation of plasma lipoprotein particle levels IEA
 biological_processGO:0097113 AMPA glutamate receptor clustering IDA
 biological_processGO:0097114 NMDA glutamate receptor clustering IDA
 biological_processGO:0098869 cellular oxidant detoxification IEA
 biological_processGO:1900221 regulation of amyloid-beta clearance IDA
 biological_processGO:1900272 negative regulation of long-term synaptic potentiation IDA
 biological_processGO:1901215 negative regulation of neuron death IDA
 biological_processGO:1901628 positive regulation of postsynaptic membrane organization IDA
 biological_processGO:1901630 negative regulation of presynaptic membrane organization IDA
 biological_processGO:1902430 negative regulation of amyloid-beta formation IDA
 biological_processGO:1902952 positive regulation of dendritic spine maintenance IDA
 biological_processGO:1902995 positive regulation of phospholipid efflux IDA
 biological_processGO:1903002 positive regulation of lipid transport across blood brain barrier IDA
 biological_processGO:1905855 positive regulation of heparan sulfate binding IDA
 biological_processGO:1905860 positive regulation of heparan sulfate proteoglycan binding IDA
 biological_processGO:1905890 regulation of cellular response to very-low-density lipoprotein particle stimulus IDA
 biological_processGO:1905906 regulation of amyloid fibril formation IDA
 biological_processGO:1905908 positive regulation of amyloid fibril formation TAS
 biological_processGO:2000822 regulation of behavioral fear response IMP
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space ISS
 cellular_componentGO:0005623 cell IEA
 cellular_componentGO:0005634 nucleus HDA
 cellular_componentGO:0005737 cytoplasm NAS
 cellular_componentGO:0005769 early endosome TAS
 cellular_componentGO:0005783 endoplasmic reticulum IDA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0005794 Golgi apparatus IDA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0030425 dendrite NAS
 cellular_componentGO:0030669 clathrin-coated endocytic vesicle membrane TAS
 cellular_componentGO:0031012 extracellular matrix IDA
 cellular_componentGO:0034361 very-low-density lipoprotein particle IDA
 cellular_componentGO:0034362 low-density lipoprotein particle IDA
 cellular_componentGO:0034363 intermediate-density lipoprotein particle IDA
 cellular_componentGO:0034364 high-density lipoprotein particle IDA
 cellular_componentGO:0034365 discoidal high-density lipoprotein particle TAS
 cellular_componentGO:0042627 chylomicron IDA
 cellular_componentGO:0043025 neuronal cell body NAS
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:0071682 endocytic vesicle lumen TAS
 cellular_componentGO:0072562 blood microparticle HDA
 cellular_componentGO:0106003 amyloid-beta complex IDA
 cellular_componentGO:1903561 extracellular vesicle HDA
 cellular_componentGO:1990777 lipoprotein particle IDA
 molecular_functionGO:0001540 amyloid-beta binding IPI
 molecular_functionGO:0005198 structural molecule activity TAS
 molecular_functionGO:0005319 lipid transporter activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005543 phospholipid binding IDA
 molecular_functionGO:0008201 heparin binding IDA
 molecular_functionGO:0008289 lipid binding IEA
 molecular_functionGO:0015485 cholesterol binding IBA
 molecular_functionGO:0016209 antioxidant activity IDA
 molecular_functionGO:0017127 cholesterol transporter activity IBA
 molecular_functionGO:0042802 identical protein binding IDA
 molecular_functionGO:0042803 protein homodimerization activity IDA
 molecular_functionGO:0046911 metal chelating activity IDA
 molecular_functionGO:0046983 protein dimerization activity IDA
 molecular_functionGO:0048156 tau protein binding IPI
 molecular_functionGO:0050750 low-density lipoprotein particle receptor binding IPI
 molecular_functionGO:0060228 phosphatidylcholine-sterol O-acyltransferase activator activity IDA
 molecular_functionGO:0070326 very-low-density lipoprotein particle receptor binding IPI
 molecular_functionGO:0071813 lipoprotein particle binding IEA


Pathways (from Reactome)
Pathway description
Scavenging by Class A Receptors
Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
Transcriptional regulation by the AP-2 (TFAP2) family of transcription factors
Post-translational protein phosphorylation
Chylomicron assembly
Chylomicron remodeling
Chylomicron clearance
HDL remodeling
Retinoid metabolism and transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000093 Proteinuria 
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 HP:0000478 Abnormality of the eyes "Any abnormality of the `eyes` (FMA:54448), including location, spacing, and intraocular abnormalities." [HPO:curators]
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 HP:0000488 Retinopathy 
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 HP:0000498 Blepharitis "Inflammation of the eyelids." [HPO:curators]
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 HP:0000726 Dementia 
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 HP:0000799 Fatty kidneys 
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 HP:0000819 Diabetes mellitus 
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 HP:0000821 Hypothyroidism 
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 HP:0000953 Hyperpigmentation 
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 HP:0000967 Petechiae 
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 HP:0000969 Edema "An abnormal accumulation of fluid beneath the skin, or in one or more cavities of the body. Edema may be related to one or more of the following factors: 1) increased capillary hydrostatic pressure, 2) decreased osmotic pressure of plasma, 3) decreased tissue tension and lymphatic drainage, 4) increased osmotic pressure of tissue fluids, and 5) increased capillary permeability." [HPO:curators]
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 HP:0001010 Hypopigmentation of the skin 
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 HP:0001084 Corneal arcus "A hazy, grayish-white ring about 2 mm in width located close to but separated from the limbus (the corneoscleral junction). Corneal arcus generally occurs bilaterally, and is related to lipid deposition in the cornea. Corneal arcus can occur in elderly persons as a part of the aging process but may be associated with hypercholesterolemia in people under the age of 50 years." [HPO:curators]
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 HP:0001114 Xanthelasma "The presence of xanthomata in the skin of the eyelid." [HPO:curators]
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 HP:0001300 Parkinsonism 
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 HP:0001394 Cirrhosis 
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 HP:0001397 Hepatic steatosis 
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 HP:0001482 Subcutaneous nodules 
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001681 Angina pectoris 
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 HP:0001735 Pancreatitis, acute 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001873 Thrombocytopenia 
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 HP:0001982 Sea-blue histiocytes 
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 HP:0001997 Gout 
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 HP:0002113 Pulmonary infiltrates 
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 HP:0002155 Hypertriglyceridemia 
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 HP:0002185 Neurofibrillary tangles 
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 HP:0002221 Absent axillary hair 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002423 Long-tract signs 
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 HP:0002511 Alzheimer disease 
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 HP:0002635 Atheromatosis 
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 HP:0003124 Hypercholesterolemia 
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 HP:0003141 Increased beta-lipoproteins "An increase in the blood concentration of beta lipoprotein, which is a low-density lipoprotein involved in the blood transport of cholesterol." [HPO:curators]
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 HP:0003233 Decreased HDL cholesterol 
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 HP:0003584 Late onset 
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 HP:0003596 Middle age onset 
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 HP:0004943 Accelerated atherosclerosis 
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 HP:0004950 Peripheral arterial disease 
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 HP:0005181 Premature coronary artery disease 
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 HP:0006979 Sleep-wake cycle disturbance 
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 HP:0010874 Tendon xanthomatosis "The presence of xanthomas (intra-and extra-cellular accumulations of cholesterol) extensor tendons (typically over knuckles, Achilles tendon, knee, and elbows)." [HPO:probinson]
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 HP:0011970 Cerebral amyloid angiopathy "Amyloid deposition in the walls of leptomeningeal and cortical arteries, arterioles, and less often capillaries and veins of the central nervous system." [HPO:probinson, pmid:21519520]
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 HP:0012397 Aortic atherosclerosis "The presence of atheromas or atherosclerotic plaques in the `aorta` (FMA:3734)." [HPO:probinson, pmid:16818829]
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 HP:0012574 Mesangial proliferation "Increased numbers of mesangial cells per glomerulus." [Eurenomics:fschaefer]
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 HP:0100721 Mediastinal lymphadenopathy 
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 HP:0100820 Glomerulopathy "Inflammatory or noninflammatory diseases affecting the glomeruli of the nephron." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000130164 LDLR / P01130 / low density lipoprotein receptor  / complex / reaction
 ENSG00000123384 LRP1 / Q07954 / LDL receptor related protein 1  / reaction
 ENSG00000110245 APOC3 / P02656 / apolipoprotein C3  / reaction / complex
 ENSG00000234906 APOC2 / P02655 / apolipoprotein C2  / reaction / complex
 ENSG00000081479 LRP2 / P98164 / LDL receptor related protein 2  / reaction
 ENSG00000157193 LRP8 / Q14114 / LDL receptor related protein 8  / reaction






 

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