ENSDARG00000022615


Danio rerio

Features
Gene ID: ENSDARG00000022615
  
Biological name :si:ch211-241e1.3
  
Synonyms : si:ch211-241e1.3
  
Possible biological names infered from orthology : LAMA3 / laminin subunit alpha 3 / Mus musculus laminin, alpha 3 (Lama3), transcript variant 2, mRNA. / Q16787 / Q61789
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 944341
Gene end: 985417
  
Corresponding Affymetrix probe sets: Dr.8434.1.S1_at (Zebrafish Array)   XM_690939_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000119869
NCBI entrez gene - 567640     See in Manteia.
RefSeq - XM_690939
swissprot - F1R9B8
ZFIN ID - ZDB-GENE-030131-230
Ensembl - ENSDARG00000022615
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000043390Gallus gallus
 ENSGALG00000015056Gallus gallus
 LAMA3ENSG00000053747Homo sapiens
 Lama3ENSMUSG00000024421Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lama3 / laminin, alpha 3 / Q16787* / Q61789* / laminin subunit alpha 3* / Mus musculus laminin, alpha 3 (Lama3), transcript variant 2, mRNA.*ENSDARG0000007146236
lama5 / laminin, alpha 5 / O15230* / Q61001* / laminin subunit alpha 5*ENSDARG0000005854327
lama4 / laminin, alpha 4 / P97927* / Q16363* / laminin subunit alpha 4*ENSDARG0000002078523
lama1 / laminin, alpha 1 / P25391* / laminin subunit alpha 1*ENSDARG0000010227720
lamc1 / Q1LVF0 / laminin, gamma 1 / P11047* / laminin subunit gamma 1*ENSDARG0000003627910
lamb2 / laminin, beta 2 (laminin S) / P55268* / Q61292* / laminin subunit beta 2*ENSDARG000000020849
lamb1b / laminin, beta 1b / LAMB1* / P02469* / P07942* / laminin subunit beta 1*ENSDARG000000455249
lamb2l / laminin, beta 2-likeENSDARG000000339509
lamc3 / laminin, gamma 3 / Q9R0B6* / Q9Y6N6* / laminin subunit gamma 3*ENSDARG000000935728
lamb4 / laminin, beta 4 / A4D0S4* / laminin subunit beta 4*ENSDARG000000391338
lamb1a / laminin, beta 1a / LAMB1* / P02469* / P07942* / laminin subunit beta 1*ENSDARG000001012098
lamc2 / laminin, gamma 2 / Q13753* / laminin subunit gamma 2*ENSDARG000000682886
CABZ01092781.1 / LAMB3* / Q13751* / laminin subunit beta 3*ENSDARG000001100406
lama2 / laminin, alpha 2 / P24043* / laminin subunit alpha 2*ENSDARG000000993905
ntn4 / netrin 4 / Q9HB63* / Q9JI33*ENSDARG000001020663
si:dkey-202e22.2ENSDARG000000612602
CABZ01065423.1 / LAMA2* / P24043* / laminin subunit alpha 2*ENSDARG000001120191


Protein motifs (from Interpro)
Interpro ID Name
 IPR001791  Laminin G domain
 IPR002049  Laminin EGF domain
 IPR009254  Laminin alpha, domain I
 IPR010307  Laminin domain II
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0030155 regulation of cell adhesion IEA
 biological_processGO:0030334 regulation of cell migration IEA
 biological_processGO:0045995 regulation of embryonic development IEA
 molecular_functionGO:0005102 signaling receptor binding IEA


Pathways (from Reactome)
Pathway description
Degradation of the extracellular matrix
Assembly of collagen fibrils and other multimeric structures
Anchoring fibril formation
Laminin interactions
Type I hemidesmosome assembly
MET activates PTK2 signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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