ENSG00000172037


Homo sapiens

Features
Gene ID: ENSG00000172037
  
Biological name :LAMB2
  
Synonyms : LAMB2 / laminin subunit beta 2 / P55268
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: p21.31
Gene start: 49121114
Gene end: 49133118
  
Corresponding Affymetrix probe sets: 216264_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000388325
Ensembl peptide - ENSP00000444751
Ensembl peptide - ENSP00000307156
NCBI entrez gene - 3913     See in Manteia.
OMIM - 150325
RefSeq - NM_002292
RefSeq - XM_005265127
RefSeq Peptide - NP_002283
swissprot - A0A024R319
swissprot - F5H520
swissprot - P55268
Ensembl - ENSG00000172037
  
Related genetic diseases (OMIM): 609049 - Pierson syndrome, 609049
  614199 - Nephrotic syndrome, type 5, with or without ocular abnormalities, 614199
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lamb2ENSDARG00000002084Danio rerio
 LAMB2ENSGALG00000006802Gallus gallus
 Lamb2ENSMUSG00000052911Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LAMB1 / P07942 / laminin subunit beta 1ENSG0000009113650
LAMB4 / A4D0S4 / laminin subunit beta 4ENSG0000009112838
LAMA5 / O15230 / laminin subunit alpha 5ENSG0000013070226
LAMB3 / Q13751 / laminin subunit beta 3ENSG0000019687823
LAMA3 / Q16787 / laminin subunit alpha 3ENSG0000005374723
LAMA2 / P24043 / laminin subunit alpha 2ENSG0000019656920
LAMA1 / P25391 / laminin subunit alpha 1ENSG0000010168019
LAMC3 / Q9Y6N6 / laminin subunit gamma 3ENSG0000005055517
LAMC1 / P11047 / laminin subunit gamma 1ENSG0000013586217
NTN4 / Q9HB63 / netrin 4ENSG0000007452713
LAMC2 / Q13753 / laminin subunit gamma 2ENSG0000005808511
LAMA4 / Q16363 / laminin subunit alpha 4ENSG0000011276910


Protein motifs (from Interpro)
Interpro ID Name
 IPR000742  EGF-like domain
 IPR002049  Laminin EGF domain
 IPR008211  Laminin, N-terminal
 IPR008979  Galactose-binding-like domain superfamily
 IPR013015  Laminin IV type B
 IPR013032  EGF-like, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000904 cell morphogenesis involved in differentiation IEA
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007411 axon guidance IEA
 biological_processGO:0007528 neuromuscular junction development IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0014002 astrocyte development IEA
 biological_processGO:0014044 Schwann cell development IEA
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0031175 neuron projection development IEA
 biological_processGO:0043687 post-translational protein modification TAS
 biological_processGO:0044267 cellular protein metabolic process TAS
 biological_processGO:0048677 axon extension involved in regeneration IEA
 biological_processGO:0050808 synapse organization IEA
 biological_processGO:0060041 retina development in camera-type eye IEA
 biological_processGO:0072249 metanephric glomerular visceral epithelial cell development IEA
 biological_processGO:0072274 metanephric glomerular basement membrane development IEA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005604 basement membrane IEA
 cellular_componentGO:0005605 basal lamina TAS
 cellular_componentGO:0005608 laminin-3 complex IPI
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0031012 extracellular matrix ISS
 cellular_componentGO:0043083 synaptic cleft IEA
 cellular_componentGO:0043256 laminin complex IEA
 cellular_componentGO:0043260 laminin-11 complex TAS
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005178 integrin binding IEA
 molecular_functionGO:0005198 structural molecule activity NAS


Pathways (from Reactome)
Pathway description
Laminin interactions
Non-integrin membrane-ECM interactions
ECM proteoglycans
Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
MET activates PTK2 signaling
Post-translational protein phosphorylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000093 Proteinuria 
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 HP:0000100 Nephrotic syndrome 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000545 Myopia 
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000969 Edema "An abnormal accumulation of fluid beneath the skin, or in one or more cavities of the body. Edema may be related to one or more of the following factors: 1) increased capillary hydrostatic pressure, 2) decreased osmotic pressure of plasma, 3) decreased tissue tension and lymphatic drainage, 4) increased osmotic pressure of tissue fluids, and 5) increased capillary permeability." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001284 Areflexia 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001967 Diffuse mesangial sclerosis 
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 HP:0003075 Hypoproteinemia 
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 HP:0003623 Onset in neonatal period 
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 HP:0003774 End stage renal disease 
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 HP:0007676 Hypoplasia of the iris 
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 HP:0007774 Hypoplasia of the ciliary body 
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 HP:0011502 Posterior lenticonus "A conical projection of the posterior surface of the lens, occurring as a developmental anomaly." [DDD:gblack]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000005884 ITGA3 / P26006 / integrin subunit alpha 3  / complex / reaction
 ENSG00000132470 ITGB4 / P16144 / integrin subunit beta 4  / reaction / complex
 ENSG00000112769 LAMA4 / Q16363 / laminin subunit alpha 4  / complex
 ENSG00000091409 ITGA6 / P23229 / integrin subunit alpha 6  / complex / reaction
 ENSG00000135862 LAMC1 / P11047 / laminin subunit gamma 1  / complex
 ENSG00000053747 LAMA3 / Q16787 / laminin subunit alpha 3  / complex
 ENSG00000050555 LAMC3 / Q9Y6N6 / laminin subunit gamma 3  / complex
 ENSG00000130702 LAMA5 / O15230 / laminin subunit alpha 5  / complex
 ENSG00000058085 LAMC2 / Q13753 / laminin subunit gamma 2  / complex
 ENSG00000150093 ITGB1 / P05556 / integrin subunit beta 1  / reaction / complex
 ENSG00000101680 LAMA1 / P25391 / laminin subunit alpha 1  / complex
 ENSG00000196569 LAMA2 / P24043 / laminin subunit alpha 2  / complex






 

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