ENSG00000115221


Homo sapiens

Features
Gene ID: ENSG00000115221
  
Biological name :ITGB6
  
Synonyms : integrin subunit beta 6 / ITGB6 / P18564
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: q24.2
Gene start: 160099666
Gene end: 160200313
  
Corresponding Affymetrix probe sets: 208083_s_at (Human Genome U133 Plus 2.0 Array)   208084_at (Human Genome U133 Plus 2.0 Array)   226535_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000386828
Ensembl peptide - ENSP00000386477
Ensembl peptide - ENSP00000408024
Ensembl peptide - ENSP00000481183
Ensembl peptide - ENSP00000283249
Ensembl peptide - ENSP00000386367
NCBI entrez gene - 3694     See in Manteia.
OMIM - 147558
RefSeq - NM_001282354
RefSeq - NM_000888
RefSeq - NM_001282353
RefSeq - NM_001282355
RefSeq - NM_001282388
RefSeq - NM_001282389
RefSeq - NM_001282390
RefSeq Peptide - NP_001269318
RefSeq Peptide - NP_001269319
RefSeq Peptide - NP_001269282
RefSeq Peptide - NP_001269283
RefSeq Peptide - NP_001269284
RefSeq Peptide - NP_001269317
RefSeq Peptide - NP_000879
swissprot - P18564
swissprot - F8WBJ8
swissprot - A0A087WXP3
swissprot - E9PEE8
Ensembl - ENSG00000115221
  
Related genetic diseases (OMIM): 616221 - Amelogenesis imperfecta, type IH, 616221
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 itgb6ENSDARG00000002494Danio rerio
 ITGB6ENSGALG00000011141Gallus gallus
 Itgb6ENSMUSG00000026971Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ITGB3 / P05106 / integrin subunit beta 3ENSG0000025920749
AC068234.1ENSG0000025975347
ITGB5 / P18084 / integrin subunit beta 5ENSG0000008278147
ITGB1 / P05556 / integrin subunit beta 1ENSG0000015009340
ITGB2 / P05107 / integrin subunit beta 2ENSG0000016025537
ITGB7 / P26010 / integrin subunit beta 7ENSG0000013962637
ITGB8 / P26012 / integrin subunit beta 8ENSG0000010585534
ITGB4 / P16144 / integrin subunit beta 4ENSG0000013247033
ITGBL1 / O95965 / integrin subunit beta like 1ENSG0000019854217


Protein motifs (from Interpro)
Interpro ID Name
 IPR002369  Integrin beta subunit, VWA domain
 IPR012896  Integrin beta subunit, tail
 IPR013111  EGF-like domain, extracellular
 IPR014836  Integrin beta subunit, cytoplasmic domain
 IPR015436  Integrin beta-6 subunit
 IPR015812  Integrin beta subunit
 IPR016201  PSI domain
 IPR021157  Cytochrome c1, transmembrane anchor, C-terminal
 IPR032695  Integrin domain superfamily
 IPR033760  Integrin beta N-terminal
 IPR036349  Integrin beta tail domain superfamily
 IPR036465  von Willebrand factor A-like domain superfamily
 IPR037076  Integrin beta subunit, cytoplasmic domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006954 inflammatory response IEA
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007160 cell-matrix adhesion IEA
 biological_processGO:0007229 integrin-mediated signaling pathway IEA
 biological_processGO:0016032 viral process IEA
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0033627 cell adhesion mediated by integrin IDA
 biological_processGO:0038044 transforming growth factor-beta secretion IEA
 biological_processGO:0046718 viral entry into host cell IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005925 focal adhesion IEA
 cellular_componentGO:0008305 integrin complex IEA
 cellular_componentGO:0009897 external side of plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IDA
 cellular_componentGO:0034685 integrin alphav-beta6 complex IEA
 cellular_componentGO:0043235 receptor complex IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0001618 virus receptor activity IEA
 molecular_functionGO:0005178 integrin binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Elastic fibre formation
Molecules associated with elastic fibres
Integrin cell surface interactions
ECM proteoglycans


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000400 Large ears 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000705 Amelogenesis imperfecta 
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 HP:0000815 Hypergonadotropic hypogonadism "Reduced function of the gonads (testes in males or ovaries in females) associated with excess pituitary gonadotropin secretion and resulting in delayed sexual development and growth delay." [HPO:curators]
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 HP:0001156 Brachydactyly 
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 HP:0001171 Ectrodactyly (hands) 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001371 Contractures 
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 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
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 HP:0002209 Sparse scalp hair "Sparseness of the `head hair` (FMA:54241)." [HPO:probinson]
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 HP:0002231 Sparse body hair "Sparseness of the body hair." [HPO:probinson]
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005105 Abnormal nasal morphology 
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 HP:0006286 Yellow-brown discoloration of the teeth 
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 HP:0006297 Hypoplastic dental enamel 
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 HP:0008064 Ichthyosiform abnormality of the skin 
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 HP:0009102 Anterior openbite malocclusion 
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 HP:0009722 Dental enamel pits "The presence of pits in the dental enamel." [HPO:curators]
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 HP:0100840 Aplasia/Hypoplasia of the eyebrow "Absence or underdevelopment of the eyebrow." [HPO:probinson]
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 HP:0200012 Short corpus callosum 
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 HP:0200095 Anterior open bite 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000166147 FBN1 / P35555 / fibrillin 1  / complex / reaction
 ENSG00000138448 ITGAV / P06756 / integrin subunit alpha V  / complex






 

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