ENSG00000182871


Homo sapiens

Features
Gene ID: ENSG00000182871
  
Biological name :COL18A1
  
Synonyms : COL18A1 / collagen type XVIII alpha 1 chain / P39060
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 21
Strand: 1
Band: q22.3
Gene start: 45405137
Gene end: 45513720
  
Corresponding Affymetrix probe sets: 209081_s_at (Human Genome U133 Plus 2.0 Array)   209082_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000347665
Ensembl peptide - ENSP00000339118
Ensembl peptide - ENSP00000383191
Ensembl peptide - ENSP00000415692
Ensembl peptide - ENSP00000352798
NCBI entrez gene - 80781     See in Manteia.
OMIM - 120328
RefSeq - NM_030582
RefSeq - NM_130445
RefSeq - NM_130444
RefSeq Peptide - NP_085059
RefSeq Peptide - NP_569712
RefSeq Peptide - NP_569711
swissprot - P39060
swissprot - H7BXV5
swissprot - H7C457
Ensembl - ENSG00000182871
  
Related genetic diseases (OMIM): 267750 - Knobloch syndrome, type 1, 267750
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col18a1aENSDARG00000036558Danio rerio
 col18a1bENSDARG00000095901Danio rerio
 COL18A1ENSGALG00000038311Gallus gallus
 P39061ENSMUSG00000001435Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P39059 / COL15A1 / collagen type XV alpha 1 chainENSG0000020429128


Protein motifs (from Interpro)
Interpro ID Name
 IPR001791  Laminin G domain
 IPR008160  Collagen triple helix repeat
 IPR010363  Domain of unknown function DUF959, collagen XVIII, N-terminal
 IPR010515  Collagenase NC10/endostatin
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold
 IPR020067  Frizzled domain
 IPR035523  Collagen alpha-1(XVIII) chain, frizzled domain
 IPR036790  Frizzled cysteine-rich domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001525 angiogenesis IEA
 biological_processGO:0001886 endothelial cell morphogenesis IEA
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007601 visual perception TAS
 biological_processGO:0008284 positive regulation of cell proliferation IEA
 biological_processGO:0008285 negative regulation of cell proliferation TAS
 biological_processGO:0009887 animal organ morphogenesis TAS
 biological_processGO:0030198 extracellular matrix organization IEA
 biological_processGO:0030335 positive regulation of cell migration IEA
 biological_processGO:0030574 collagen catabolic process TAS
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0051599 response to hydrostatic pressure IEA
 biological_processGO:2000353 positive regulation of endothelial cell apoptotic process IEA
 cellular_componentGO:0005576 extracellular region IDA
 cellular_componentGO:0005581 collagen trimer TAS
 cellular_componentGO:0005604 basement membrane IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0031012 extracellular matrix TAS
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005198 structural molecule activity IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Activation of Matrix Metalloproteinases
Collagen biosynthesis and modifying enzymes
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
Laminin interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
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 HP:0000238 Hydrocephalus 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000519 Congenital cataract "A congenital `cataract` (HP:0000518)." [HPO:probinson]
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 HP:0000529 Progressive visual loss 
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 HP:0000541 Detached retina 
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 HP:0000545 Myopia 
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 HP:0000572 Visual loss 
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 HP:0000585 Band keratopathy "An `abnormality of the cornea` (HP:0000481) characterized by the deposition of calcium in a band across the central cornea, leading to decreased vision, foreign body sensation, and ocular irritation." [HPO:probinson]
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 HP:0000608 Macular degeneration 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000655 Vitreoretinal degeneration 
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 HP:0000667 Phthisis bulbi "Atrophy of the eyeball with blindness and decreased intraocular pressure due to end-stage intraocular disease." [HPO:curators]
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 HP:0001083 Ectopia lentis 
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 HP:0001104 Macular hypoplasia 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001268 Mental deterioration 
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 HP:0001272 Cerebellar atrophy 
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 HP:0001362 Skull defect "A localized defect in the bone of the skull resulting from abnormal embryological development. The defect is covered by normal skin. In some cases, skull x-rays have shown underlying lytic bone lesions which have closed before the age of one year." [HPO:curators]
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 HP:0001595 Hair abnormality 
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001651 Dextrocardia "A left-right reversal (or "mirror reflection") of the anatomical location of the heart in which the heart is locate on the right side in stead of the left." [HPO:sdoelken]
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 HP:0002021 Pyloric stenosis 
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 HP:0002059 Cerebral atrophy 
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 HP:0002085 Occipital encephalocele 
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 HP:0002119 Ventriculomegaly 
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 HP:0002126 Polymicrogyria "A congenital abnormality of the cerebral hemisphere characterized by an excessive number of small gyri (convolutions) on the surface of the brain." [HPO:curators]
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 HP:0003812 Phenotypic variability 
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 HP:0004327 Abnormality of the vitreous humor 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0005692 Joint hyperflexibility 
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 HP:0011003 Severe Myopia 
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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 HP:0030037 Bifid ureter "Incomplete duplication of the ureter." []
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 HP:0100764 Lymphangioma "Malformation of the lymphatic system." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000101680 LAMA1 / P25391 / laminin subunit alpha 1  / complex / reaction
 ENSG00000091136 LAMB1 / P07942 / laminin subunit beta 1  / complex / reaction
 ENSG00000182871 P39060 / COL18A1 / collagen type XVIII alpha 1 chain  / complex
 ENSG00000135862 LAMC1 / P11047 / laminin subunit gamma 1  / reaction / complex






 

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