ENSGALG00000038311


Gallus gallus

Features
Gene ID: ENSGALG00000038311
  
Biological name :COL18A1
  
Synonyms : COL18A1 / collagen type XVIII alpha 1 chain
  
Possible biological names infered from orthology : Collagen alpha-1(XVIII) chain Endostatin Non-collagenous domain 1 / P39060 / P39061
  
Species: Gallus gallus
  
Chr. number: 7
Strand: 1
Band:
Gene start: 6633230
Gene end: 6662722
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSGALP00000047998
swissprot - A0A1D5P5M7
Ensembl - ENSGALG00000038311
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col18a1aENSDARG00000036558Danio rerio
 col18a1bENSDARG00000095901Danio rerio
 P39060ENSG00000182871Homo sapiens
 P39061ENSMUSG00000001435Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL15A1 / collagen type XV alpha 1 chain / O35206* / P39059* / Collagen alpha-1(XV) chain Restin*ENSGALG0000003411929


Protein motifs (from Interpro)
Interpro ID Name
 IPR001791  Laminin G domain
 IPR010515  Collagenase NC10/endostatin
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001525 angiogenesis IEA
 biological_processGO:0001886 endothelial cell morphogenesis IEA
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0008284 positive regulation of cell proliferation IEA
 biological_processGO:0030198 extracellular matrix organization IEA
 biological_processGO:0030335 positive regulation of cell migration IEA
 biological_processGO:2000353 positive regulation of endothelial cell apoptotic process IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005604 basement membrane IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Activation of Matrix Metalloproteinases
Collagen biosynthesis and modifying enzymes
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
Laminin interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr