ENSDARG00000036558


Danio rerio

Features
Gene ID: ENSDARG00000036558
  
Biological name :col18a1a
  
Synonyms : col18a1a / collagen type XVIII alpha 1 chain a
  
Possible biological names infered from orthology : COL18A1 / Collagen alpha-1(XVIII) chain Endostatin Non-collagenous domain 1 / collagen type XVIII alpha 1 chain / P39060 / P39061
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 41821613
Gene end: 41979505
  
Corresponding Affymetrix probe sets: Dr.3373.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000002450
Ensembl peptide - ENSDARP00000108133
Ensembl peptide - ENSDARP00000088066
NCBI entrez gene - 564123     See in Manteia.
RefSeq - XM_021478720
RefSeq - XM_021478722
swissprot - B0S8G5
swissprot - B0S8G4
swissprot - B0S8G3
ZFIN ID - ZDB-GENE-030516-3
Ensembl - ENSDARG00000036558
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COL18A1ENSGALG00000038311Gallus gallus
 P39060ENSG00000182871Homo sapiens
 P39061ENSMUSG00000001435Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
col15a1b / collagen, type XV, alpha 1b / P39059* / O35206* / COL15A1* / collagen type XV alpha 1 chain* / Collagen alpha-1(XV) chain Restin*ENSDARG0000006184838
col18a1b / collagen type XVIII alpha 1 chain b / P39060* / COL18A1* / collagen type XVIII alpha 1 chain*ENSDARG0000009590133


Protein motifs (from Interpro)
Interpro ID Name
 IPR001791  Laminin G domain
 IPR008160  Collagen triple helix repeat
 IPR010515  Collagenase NC10/endostatin
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold
 IPR020067  Frizzled domain
 IPR035523  Collagen alpha-1(XVIII) chain, frizzled domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001755 neural crest cell migration IMP
 biological_processGO:0007155 cell adhesion IEA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Activation of Matrix Metalloproteinases
Collagen biosynthesis and modifying enzymes
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
Laminin interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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