ENSDARG00000095901


Danio rerio

Features
Gene ID: ENSDARG00000095901
  
Biological name :col18a1b
  
Synonyms : col18a1b / collagen type XVIII alpha 1 chain b
  
Possible biological names infered from orthology : COL18A1 / Collagen alpha-1(XVIII) chain Endostatin Non-collagenous domain 1 / collagen type XVIII alpha 1 chain / P39060 / P39061
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 20678890
Gene end: 20707846
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000137118
swissprot - A0A0R4ILV8
ZFIN ID - ZDB-GENE-110411-288
Ensembl - ENSDARG00000095901
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COL18A1ENSGALG00000038311Gallus gallus
 P39060ENSG00000182871Homo sapiens
 P39061ENSMUSG00000001435Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
col18a1a / collagen type XVIII alpha 1 chain a / P39061* / P39060* / COL18A1* / collagen type XVIII alpha 1 chain* / Collagen alpha-1(XVIII) chain Endostatin Non-collagenous domain 1*ENSDARG0000003655853
col15a1b / collagen, type XV, alpha 1b / P39059* / O35206* / COL15A1* / collagen type XV alpha 1 chain* / Collagen alpha-1(XV) chain Restin*ENSDARG0000006184841


Protein motifs (from Interpro)
Interpro ID Name
 IPR008160  Collagen triple helix repeat
 IPR010515  Collagenase NC10/endostatin
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Activation of Matrix Metalloproteinases
Collagen biosynthesis and modifying enzymes
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
Laminin interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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