ENSG00000009830


Homo sapiens

Features
Gene ID: ENSG00000009830
  
Biological name :POMT2
  
Synonyms : POMT2 / protein O-mannosyltransferase 2 / Q9UKY4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: -1
Band: q24.3
Gene start: 77274956
Gene end: 77320884
  
Corresponding Affymetrix probe sets: 220632_s_at (Human Genome U133 Plus 2.0 Array)   225560_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000452060
Ensembl peptide - ENSP00000451967
Ensembl peptide - ENSP00000487704
Ensembl peptide - ENSP00000261534
Ensembl peptide - ENSP00000450630
Ensembl peptide - ENSP00000451115
Ensembl peptide - ENSP00000451651
Ensembl peptide - ENSP00000451730
NCBI entrez gene - 29954     See in Manteia.
OMIM - 607439
RefSeq - XM_017021245
RefSeq - NM_013382
RefSeq - XM_011536675
RefSeq - XM_011536676
RefSeq - XM_011536677
RefSeq - XM_011536679
RefSeq - XM_017021244
RefSeq Peptide - NP_037514
swissprot - Q9UKY4
swissprot - G3V4X9
swissprot - H0YJA9
swissprot - H0YJJ4
swissprot - H0YJK9
swissprot - H0YJQ7
swissprot - A0A0J9YVW4
Ensembl - ENSG00000009830
  
Related genetic diseases (OMIM): 613150 - Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 2, 613150
  613156 - Muscular dystrophy-dystroglycanopathy (congenital with mental retardation), type B, 2, 613156
  613158 - Muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 2, 613158
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pomt2ENSDARG00000055027Danio rerio
 ENSGALG00000041962Gallus gallus
 Pomt2ENSMUSG00000034126Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
POMT1 / Q9Y6A1 / protein O-mannosyltransferase 1ENSG0000013071430


Protein motifs (from Interpro)
Interpro ID Name
 IPR003342  Glycosyl transferase family 39/83
 IPR016093  MIR motif
 IPR027005  Glycosyltransferase 39-like
 IPR032421  Protein O-mannosyl-transferase, C-terminal four TM domain
 IPR036300  Mir domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006486 protein glycosylation IEA
 biological_processGO:0006493 protein O-linked glycosylation IEA
 biological_processGO:0035269 protein O-linked mannosylation IEA
 biological_processGO:0071712 ER-associated misfolded protein catabolic process IBA
 biological_processGO:0097502 mannosylation IEA
 biological_processGO:1904100 positive regulation of protein O-linked glycosylation IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0000030 mannosyltransferase activity IEA
 molecular_functionGO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016757 transferase activity, transferring glycosyl groups IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Defective POMT2 causes MDDGA2, MDDGB2 and MDDGC2
O-linked glycosylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000050 Hypoplastic genitalia 
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 HP:0000054 Micropenis 
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 HP:0000110 Renal dysplasia 
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 HP:0000158 Macroglossia "Increased length and width of the tongue." [pmid:19125428]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000176 Submucous cleft palate "A cleft palate that is covered by the mucous membrane of the roof of the mouth, which can make the cleft more difficult to observe upon physical examination. Soft-palate submucous clefts are characterized by a midline deficiency or lack of muscle tissue. Hard-palate submucous clefts are characterized by bony defects in the midline of the bony palate. It may be possible to detect a submucous cleft palate upon palpation as a notch in the bony palate." [HPO:curators, pmid:19779505]
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 HP:0000193 Bifid uvula "A split or cleft uvula." [HPO:curators]
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 HP:0000194 Open mouth 
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 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
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 HP:0000238 Hydrocephalus 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000411 Protruding ears 
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 HP:0000413 External auditory canal atresia "Absence or failure to form of the external auditory canal." [HPO:curators]
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 HP:0000482 Microcornea "A congenital abnormality of the `cornea` (FMA:58238) in which the cornea and the anterior segment of the eye are smaller than normal. The horizontal diameter of the cornea does not reach 10 mm even in adulthood." [HPO:probinson]
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 HP:0000485 Megalocornea "An enlargement of the `cornea` (FMA:58238) with normal clarity and function. Megalocornea is diagnosed with a horizontal corneal diameter of 12 mm or more at birth or 13 mm or more after two years of age." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000528 Anophthalmia "Absence of a true eyeball." [HPO:curators]
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 HP:0000540 Hypermetropia 
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 HP:0000541 Detached retina 
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 HP:0000545 Myopia 
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 HP:0000556 Retinal dystrophy 
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 HP:0000557 Buphthalmos "Buphthalmos refers to a congenital open-angle glaucoma of the eye. The term buphthalmos (from Greek bous or ox and ophthalmos or eye) is descriptive of an enlarged eyeglobe resulting from increased intraocular pressure. The eyeglobe is especially prone to distension in newborns and infants because its collagen filaments are not as rigid as in adults and may easily be stretched." [HPO:curators]
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000580 Pigmentary retinopathy 
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 HP:0000589 Coloboma "A developmental defect characterized by a cleft of some portion of the `eye` (FMA:54448`) or ocular adnexa." [HPO:probinson]
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 HP:0000609 Optic nerve hypoplasia 
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 HP:0000612 Iris coloboma "A `coloboma` (HP:0000589) of the `iris` (FMA:58235)." [HPO:probinson]
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 HP:0000618 Blindness 
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 HP:0000648 Optic atrophy 
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 HP:0000659 Peters anomaly 
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 HP:0001105 Retinal atrophy 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001270 Motor retardation 
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001276 Hypertonia 
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 HP:0001284 Areflexia 
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001302 Pachygyria "A congenital abnormality of the cerebral hemisphere chacterized by unusually thick gyrations (convolutions) of the cerebral cortex." [HPO:curators]
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 HP:0001305 Dandy-Walker malformation "A congenital brain malformation typically characterized by incomplete formation of the cerebellar vermis, dilation of the fourth ventricle, and enlargement of the posterior fossa. In layman s terms, Dandy Walker malformation is a cyst in the cerebellum (typically symmetrical) that is involved with the fourth ventricle. This may interfere with the body s ability to drain cerebrospinal fluid from the brain, resulting in hydrocephalus. Dandy Walker cysts are formed during early embryonic development, while the brain forms. The cyst in the cerebellum typically has several blood vessels running through it connecting to the brain, thereby prohibiting surgical removal." [HPO:curators]
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001328 Learning disability 
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 HP:0001331 Absent septum pellucidum "Absence of the septum pellucidum." [HPO:curators]
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 HP:0001360 Holoprosencephaly "Holoprosencephaly is a structural anomaly of the brain in which the developing forebrain fails to divide into two separate hemispheres and ventricles." [gc:hpe]
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 HP:0001371 Contractures 
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 HP:0001425 Heterogeneous 
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 HP:0001460 Aplasia/Hypoplasia involving the musculature "Absence or underdevelopment of the musculature." [HPO:curators]
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 HP:0001608 Abnormality of the voice "Any abnormality of the voice." [HPO:curators]
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 HP:0001712 Left ventricular hypertrophy 
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 HP:0002023 Anal atresia "Congenital absence of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002084 Encephalocele 
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 HP:0002085 Occipital encephalocele 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002119 Ventriculomegaly 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002126 Polymicrogyria "A congenital abnormality of the cerebral hemisphere characterized by an excessive number of small gyri (convolutions) on the surface of the brain." [HPO:curators]
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 HP:0002167 Neurological speech impairment 
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 HP:0002187 Mental retardation, profound "Severe mental retardation is defined as an intelligence quotient (IQ) below 20." [HPO:curators]
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 HP:0002189 Excessive daytime sleepiness 
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 HP:0002350 Cerebellar cysts 
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002365 Hypoplasia of the brainstem 
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 HP:0002435 Meningocele 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002803 Congenital contractures 
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 HP:0002827 Dislocated hips 
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 HP:0003198 Myopathy 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003306 Spinal rigidity 
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 HP:0003307 Hyperlordosis 
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 HP:0003324 Generalized muscle weakness "Generalized weakness or decreased strength of the muscles." [HPO:curators]
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 HP:0003457 Abnormal EMG findings "Abnormal results of investigations using electromyography (EMG)." [HPO:curators]
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 HP:0003560 Muscular dystrophy "The term dystrophy means abnormal growth. However, muscular dystrophy is used to describe primary myopathies with a genetic basis and a progressive course characterized by progressive skeletal muscle weakness, defects in muscle proteins, and the apoptosis of muscle cells." [HPO:curators]
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 HP:0003593 Early onset 
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 HP:0003701 Proximal muscle weakness "A lack of strength of the proximal muscles." [HPO:curators]
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 HP:0003712 Muscle hypertrophy "Hypertrophy (increase in size) of muscle cells (as opposed to hyperplasia, which refers to an increase in the number of muscle cells)." [HPO:curators]
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 HP:0003741 Congenital muscular dystrophy 
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 HP:0003812 Phenotypic variability 
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 HP:0003828 Variable expressivity 
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 HP:0004374 Hemiplegia/hemiparesis "Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength." [HPO:curators]
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 HP:0006829 Severe muscular hypotonia "A severe degree of muscular hypotonia characterized by markedly reduced muscle tone." [HPO:curators]
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 HP:0006888 Meningoencephalocele 
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 HP:0006891 Thick cerebral cortex 
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 HP:0007033 Cerebellar dysplasia 
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 HP:0007227 Brain macrogyria and polymicrogyria 
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 HP:0007260 Type II lissencephaly 
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 HP:0007291 Posterior fossa cysts 
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 HP:0007360 Aplasia/Hypoplasia of the cerebellum 
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 HP:0007370 Aplasia/Hypoplasia of the corpus callosum "Absence or underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0007731 Chorioretinal dysplasia 
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 HP:0007957 Variable degree of corneal opacities 
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 HP:0007973 Retinal dysplasia 
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 HP:0008551 Underdeveloped ears 
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 HP:0008736 Hypoplasia of penis 
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 HP:0009917 Persistent pupillary membrane "The presence of remnants of a fetal membrane that persist as strands of tissue crossing the pupil." [HPO:curators]
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 HP:0010508 Metatarsus valgus "A condition in which the anterior part of the foot rotates outward away from the midline of the body and the heel remains straight." [HPO:curators]
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0011712 Right bundle branch block "A conduction block of the right branch of the bundle of His. This manifests as a prolongation of the QRS complex (greater than 0.12 s) with delayed activation of the right ventricle and terminal delay on the EKG." [DDD:dbrown, HPO:probinson]
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 HP:0012400 Abnormal aldolase level "An abnormal concentration of aldolase in the serum. Aldolase is an enzyme responsible for converting fructose 1,6-bisphosphate into the triose phosphates dihydroxyacetone phosphate and glyceraldehyde 3-phosphate." [HPO:probinson]
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 HP:0025169 Left ventricular systolic dysfunction "Abnormality of left ventricular contraction, often defined operationally as an ejection fraction of less than 40 percent." []
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 HP:0040081 Abnormal levels of creatine kinase in blood 
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 HP:0045040 Abnormal lactate dehydrogenase activity 
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000173402 DAG1 / Q14118 / dystroglycan 1  / reaction
 ENSG00000130714 POMT1 / Q9Y6A1 / protein O-mannosyltransferase 1  / complex






 

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