ENSG00000183873


Homo sapiens

Features
Gene ID: ENSG00000183873
  
Biological name :SCN5A
  
Synonyms : Q14524 / SCN5A / sodium voltage-gated channel alpha subunit 5
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: p22.2
Gene start: 38548057
Gene end: 38649673
  
Corresponding Affymetrix probe sets: 207413_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000403355
Ensembl peptide - ENSP00000399524
Ensembl peptide - ENSP00000410257
Ensembl peptide - ENSP00000479016
Ensembl peptide - ENSP00000416634
Ensembl peptide - ENSP00000413996
Ensembl peptide - ENSP00000328968
Ensembl peptide - ENSP00000333674
Ensembl peptide - ENSP00000388797
Ensembl peptide - ENSP00000398266
Ensembl peptide - ENSP00000398962
NCBI entrez gene - 6331     See in Manteia.
OMIM - 600163
RefSeq - XM_017007017
RefSeq - NM_000335
RefSeq - NM_001099404
RefSeq - NM_001099405
RefSeq - NM_001160160
RefSeq - NM_001160161
RefSeq - NM_001354701
RefSeq - NM_198056
RefSeq - XM_011533991
RefSeq Peptide - NP_932173
RefSeq Peptide - NP_000326
RefSeq Peptide - NP_001092874
RefSeq Peptide - NP_001092875
RefSeq Peptide - NP_001153632
RefSeq Peptide - NP_001153633
RefSeq Peptide - NP_001341630
swissprot - E9PHB6
swissprot - E9PG18
swissprot - Q14524
swissprot - Q86V90
swissprot - A0A0A0MT39
swissprot - A3EY21
swissprot - H9KVD2
swissprot - K4DIA1
Ensembl - ENSG00000183873
  
Related genetic diseases (OMIM): 614022 - Atrial fibrillation, familial, 10, 614022
  601144 - Brugada syndrome 1, 601144
  601154 - Cardiomyopathy, dilated, 1E, 601154
  113900 - Heart block, nonprogressive, 113900
  603830 - Long QT syndrome-3, 603830
  608567 - Sick sinus syndrome 1, 608567
  603829 - Ventricular fibrillation, familial, 1, 603829
  272120 - {Sudden infant death syndrome, susceptibility to}, 272120
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scn12aaENSDARG00000090724Danio rerio
 scn12abENSDARG00000102312Danio rerio
 SCN5AENSGALG00000006112Gallus gallus
 Scn5aENSMUSG00000032511Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SCN3A / Q9NY46 / sodium voltage-gated channel alpha subunit 3ENSG0000015325364
SCN2A / Q99250 / sodium voltage-gated channel alpha subunit 2ENSG0000013653164
SCN1A / P35498 / sodium voltage-gated channel alpha subunit 1ENSG0000014428563
SCN8A / Q9UQD0 / sodium voltage-gated channel alpha subunit 8ENSG0000019687663
Q9Y5Y9 / SCN10A / sodium voltage-gated channel alpha subunit 10ENSG0000018531361
SCN9A / Q15858 / sodium voltage-gated channel alpha subunit 9ENSG0000016943261
SCN4A / P35499 / sodium voltage-gated channel alpha subunit 4ENSG0000000731459
Q9UI33 / SCN11A / sodium voltage-gated channel alpha subunit 11ENSG0000016835648
SCN7A / Q01118 / sodium voltage-gated channel alpha subunit 7ENSG0000013654640
O95180 / CACNA1H / calcium voltage-gated channel subunit alpha1 HENSG0000019655724
O43497 / CACNA1G / calcium voltage-gated channel subunit alpha1 GENSG0000000628323
Q9P0X4 / CACNA1I / calcium voltage-gated channel subunit alpha1 IENSG0000010034623


Protein motifs (from Interpro)
Interpro ID Name
 IPR001696  Voltage gated sodium channel, alpha subunit
 IPR005821  Ion transport domain
 IPR008053  Voltage gated sodium channel, alpha-5 subunit
 IPR010526  Sodium ion transport-associated
 IPR024583  Voltage-gated Na+ ion channel, cytoplasmic domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002027 regulation of heart rate IMP
 biological_processGO:0003231 cardiac ventricle development ISS
 biological_processGO:0003360 brainstem development ISS
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006814 sodium ion transport IEA
 biological_processGO:0010765 positive regulation of sodium ion transport IDA
 biological_processGO:0014894 response to denervation involved in regulation of muscle adaptation ISS
 biological_processGO:0019228 neuronal action potential IBA
 biological_processGO:0021537 telencephalon development ISS
 biological_processGO:0021549 cerebellum development ISS
 biological_processGO:0034220 ion transmembrane transport IEA
 biological_processGO:0034765 regulation of ion transmembrane transport IEA
 biological_processGO:0035725 sodium ion transmembrane transport IEA
 biological_processGO:0042475 odontogenesis of dentin-containing tooth ISS
 biological_processGO:0045760 positive regulation of action potential ISS
 biological_processGO:0050679 positive regulation of epithelial cell proliferation ISS
 biological_processGO:0051899 membrane depolarization IDA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0060048 cardiac muscle contraction IMP
 biological_processGO:0060307 regulation of ventricular cardiac muscle cell membrane repolarization IMP
 biological_processGO:0060371 regulation of atrial cardiac muscle cell membrane depolarization IMP
 biological_processGO:0060372 regulation of atrial cardiac muscle cell membrane repolarization IMP
 biological_processGO:0060373 regulation of ventricular cardiac muscle cell membrane depolarization IMP
 biological_processGO:0061337 cardiac conduction TAS
 biological_processGO:0071277 cellular response to calcium ion IDA
 biological_processGO:0086002 cardiac muscle cell action potential involved in contraction IMP
 biological_processGO:0086004 regulation of cardiac muscle cell contraction IMP
 biological_processGO:0086005 ventricular cardiac muscle cell action potential IMP
 biological_processGO:0086010 membrane depolarization during action potential IDA
 biological_processGO:0086012 membrane depolarization during cardiac muscle cell action potential IMP
 biological_processGO:0086014 atrial cardiac muscle cell action potential IMP
 biological_processGO:0086015 SA node cell action potential IMP
 biological_processGO:0086016 AV node cell action potential IMP
 biological_processGO:0086043 bundle of His cell action potential IMP
 biological_processGO:0086045 membrane depolarization during AV node cell action potential IMP
 biological_processGO:0086046 membrane depolarization during SA node cell action potential IMP
 biological_processGO:0086047 membrane depolarization during Purkinje myocyte cell action potential IMP
 biological_processGO:0086048 membrane depolarization during bundle of His cell action potential IMP
 biological_processGO:0086067 AV node cell to bundle of His cell communication IMP
 biological_processGO:0086091 regulation of heart rate by cardiac conduction IMP
 biological_processGO:0098912 membrane depolarization during atrial cardiac muscle cell action potential IMP
 biological_processGO:1902305 regulation of sodium ion transmembrane transport IDA
 cellular_componentGO:0001518 voltage-gated sodium channel complex IEA
 cellular_componentGO:0005622 intracellular IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IDA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005901 caveola TAS
 cellular_componentGO:0009986 cell surface IDA
 cellular_componentGO:0014704 intercalated disc ISS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016328 lateral plasma membrane TAS
 cellular_componentGO:0030018 Z disc IDA
 cellular_componentGO:0030315 T-tubule IDA
 cellular_componentGO:0042383 sarcolemma IDA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005244 voltage-gated ion channel activity IEA
 molecular_functionGO:0005248 voltage-gated sodium channel activity IEA
 molecular_functionGO:0005272 sodium channel activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005516 calmodulin binding IPI
 molecular_functionGO:0017134 fibroblast growth factor binding IPI
 molecular_functionGO:0019899 enzyme binding IPI
 molecular_functionGO:0019901 protein kinase binding IPI
 molecular_functionGO:0019904 protein domain specific binding IPI
 molecular_functionGO:0030506 ankyrin binding IDA
 molecular_functionGO:0031625 ubiquitin protein ligase binding IPI
 molecular_functionGO:0044325 ion channel binding IPI
 molecular_functionGO:0050998 nitric-oxide synthase binding IPI
 molecular_functionGO:0086006 voltage-gated sodium channel activity involved in cardiac muscle cell action potential IMP
 molecular_functionGO:0086060 voltage-gated sodium channel activity involved in AV node cell action potential IMP
 molecular_functionGO:0086061 voltage-gated sodium channel activity involved in bundle of His cell action potential IMP
 molecular_functionGO:0086062 voltage-gated sodium channel activity involved in Purkinje myocyte action potential IMP
 molecular_functionGO:0086063 voltage-gated sodium channel activity involved in SA node cell action potential IMP
 molecular_functionGO:0097110 scaffold protein binding IPI


Pathways (from Reactome)
Pathway description
Interaction between L1 and Ankyrins
Phase 0 - rapid depolarisation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000982 Palmoplantar keratoderma 
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 HP:0001279 Syncope "Syncope refers to a generalized weakness of muscles with loss of postural tone, inability to stand upright, and loss of consciousness. Once the patient is in a horizontal position, blood flow to the brain is no longer hindered by gravitation and consciousness is regained. Unconsciousness usually lasts for seconds to minutes. Headache and drowsiness (which usually follow seizures) do not follow a syncopal attack. Syncope results from a sudden impairment of brain metabolism usually due to a reduction in cerebral blood flow. This term refers to an abnormally increased disposition to syncope." [HPO:curators]
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 HP:0001297 Stroke 
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 HP:0001425 Heterogeneous 
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 HP:0001644 Dilated cardiomyopathy 
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 HP:0001645 Sudden cardiac death 
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 HP:0001657 Prolonged QT interval on EKG 
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 HP:0001663 Ventricular fibrillation 
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 HP:0001664 Torsade de pointes 
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 HP:0001678 Atrioventricular block 
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 HP:0001688 Sinus bradycardia 
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 HP:0001695 Cardiac arrest 
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 HP:0001699 Sudden death 
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 HP:0001712 Left ventricular hypertrophy 
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 HP:0001874 Abnormality of neutrophil 
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 HP:0001962 Palpitations 
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 HP:0002094 Dyspnea 
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 HP:0003198 Myopathy 
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003457 Abnormal EMG findings "Abnormal results of investigations using electromyography (EMG)." [HPO:curators]
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 HP:0003577 Onset at birth 
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 HP:0004749 Atrial fibrillation or flutter 
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 HP:0004755 Supraventricular tachyarrhythmias 
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 HP:0004757 paroxysmal atrial fibrillation 
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 HP:0005110 Atrial fibrillation 
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 HP:0005155 Ventricular escape rhythms 
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 HP:0005170 Complete heart block with broad RS complexes 
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 HP:0005172 Left anterior or posterior hemiblock 
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 HP:0005180 Tricuspid insufficiency 
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 HP:0006671 Paroxysmal atrial tachycardia 
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 HP:0006673 Reduced systolic function 
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 HP:0006682 Ventricular extrasystoles "Premature ventricular contractions (PVC) or ventricular extrasystoles are premature contractions of the heart that arise in response to an impulse in the ventricles rather than the normal impulse from the sinoatrial (SA) node." [HPO:curators]
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 HP:0006699 Ectopic supraventricular rhythms 
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 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
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 HP:0011704 Sick sinus syndrome 
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 HP:0011711 Left anterior fascicular block "Conduction block in the anterior division of the left bundle branch of the bundle of His." [DDD:dbrown]
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 HP:0011712 Right bundle branch block "A conduction block of the right branch of the bundle of His. This manifests as a prolongation of the QRS complex (greater than 0.12 s) with delayed activation of the right ventricle and terminal delay on the EKG." [DDD:dbrown, HPO:probinson]
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 HP:0011713 Left bundle branch block "A conduction block of the left branch of the bundle of His. This manifests as a generalized disturbance of QRS morphology on EKG." [DDD:dbrown, HPO:probinson]
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 HP:0025478 Atrial standstill "Atrial standstill or silent atrium is a rare condition presenting with the absence of electrical and mechanical activity in the atria. It presents with the absence of P waves, bradycardia, and wide QRS complex in the electrocardiogram." [PMID:23074623]
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 HP:0100578 Lipoatrophy "Localized loss of fat tissue." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000145362 ANK2 / Q01484 / ankyrin 2  / complex / reaction
 ENSG00000029534 ANK1 / P16157 / ankyrin 1  / complex / reaction
 ENSG00000105711 SCN1B / Q07699 / sodium voltage-gated channel beta subunit 1  / complex
 ENSG00000163531 NFASC / O94856 / neurofascin  / reaction / complex
 ENSG00000184009 ACTG1 / P63261 / actin gamma 1  / complex / reaction
 ENSG00000075624 ACTB / P60709 / actin beta  / reaction / complex
 ENSG00000197694 Q13813 / SPTAN1 / spectrin alpha, non-erythrocytic 1  / complex / reaction
 ENSG00000091129 NRCAM / Q92823 / neuronal cell adhesion molecule  / complex / reaction
 ENSG00000163554 SPTA1 / P02549 / spectrin alpha, erythrocytic 1  / complex / reaction






 

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